PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0233.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 271aa MW: 29661 Da PI: 5.1273

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0233.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.8e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0060s0233.1.p 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLSEVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL SEVVSKVPDY SHSGTSGEVR TISRRRKAAG DDLTDSDEDS 120 KRSRLPETGH ATGGGRGRGR GRGRGRGRVG RMAEPDNVQH DFEPEASMVN LDAAQANDSK 180 GRDLLSNVKE EADGLTNPAV GKFDLNAEIK ENESMPSSEV PDILSEHAVI KQERIPGWSL 240 SEIDRLNINP LQLGSMNSAL DDEDYDEEDG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-66	NF-YC family protein