PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0232.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 273aa MW: 29737 Da PI: 5.1183

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0232.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.7	5.3e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0060s0232.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDMTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDMT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL KEVVNKVPDY THSGTSGEVQ TISRRRKGAG DELSDSDEYS 120 KRSRLQEAVP GVGGGRGRGR GRGRGRGRGR VGHVAEPDDA QNDFEPESSA VNLDAIQANN 180 NNKGRELPSD FKGDGDGLTN PVVGKFDLNT EIKEKESTPS LATDDKVSAH SAIQSENAEL 240 GISEMDRMNF NPLQLGSMKS TFDDDEDYDD DG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG
6	140	150	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-64	NF-YC family protein