PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0054s0029.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 726aa    MW: 81229.7 Da    PI: 7.6938
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0054s0029.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22116217199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+lt+sd++ +g +++pk+faee       +++++  ++lt +d +g+ W++++i+r++++r++lt GW  F + +++ +gD+++F  
  Kaladp0054s0029.1.p 116 FSKILTSSDTSPQGGFTVPKRFAEEAlpsldmSQQPPI-QDLTATDIHGKAWTFRHIFRGNPKRHLLTCGWHPFLNNKQVAAGDTCIFV- 203
                          889***************************97545555.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + s++el+++++r+
  Kaladp0054s0029.1.p 204 -RGSNGELRIGIRRA 217
                          .449999*****985 PP
2Auxin_resp84.32.6e-28242323283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           +a+  +++F v+Y+P++ +s+F+v+++k++k++k+++s+G Rf  ++e+e+s+++r +G v+++ dld +rWp+S+W+ Lk
  Kaladp0054s0029.1.p 242 FNALLYGTIFVVYYHPWTRSSDFIVPYAKYVKSVKIQCSIGARFTTSLEGEESERKRSTGRVIAIDDLDCLRWPGSEWKRLK 323
                          56777889***********************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MDGRRHELDE ALWHGSAGHD IYIPQVGDLV AYFPQGHLEQ VKACTNHDDD LDTSSLFKLP  60
SKILCSVIDV QLKAESKTDE VFARITLHPE AKQEMSEWEE MNDECRSASI RNVKIFSKIL  120
TSSDTSPQGG FTVPKRFAEE ALPSLDMSQQ PPIQDLTATD IHGKAWTFRH IFRGNPKRHL  180
LTCGWHPFLN NKQVAAGDTC IFVRGSNGEL RIGIRRALRK ENSTTSVISG HDMQLGALAS  240
AFNALLYGTI FVVYYHPWTR SSDFIVPYAK YVKSVKIQCS IGARFTTSLE GEESERKRST  300
GRVIAIDDLD CLRWPGSEWK RLKICSYFVF LICCAVMDGY PNFGIDTTLV LATVYVDQVE  360
WEAGMSEKLV RPGRISLWSI ESLEPDRRGC MLLPPSKKLS RPGLLPTHVN DGNGITLQGS  420
SSSCQGRGNK GTGAPVPSCS WPSSDPFPAY QCAMQIDKFN PQEYYSGAST YPLGLQGASS  480
PLLSLWPSAS GDGGESSNMA DVNGRFLSHD PDEANGLVAK QKELDKHMVF GFNLASTLPE  540
FPSPRPTTAS HELHRRRRRS TPMTSPSTCD AKHVSEPRLT EANNHCMKLG CCLTLHDTHA  600
KVKKCLQVRK HGCKVSISID LTRFNSYKEV IFELDQMFKF EGKLIDGSRE WQVTYIDHEV  660
EYRNSLLMIR ISSSHGILRC IVGNWWYVLF YINRKFKLIV KRLLILPKEC MEEQLPAECC  720
ATAAA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-102ARF family protein