PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0971.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 28889.6 Da PI: 9.5191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.7e-40 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C++ pyf ++p+kfa vhk+FGasnv+k+l ++pe +r d+++slvyeA++r+rdPvyG++g i++lqqq++++ Kaladp0048s0971.1.p 64 PCAACKLLRRRCAQECPFFPYFSPHEPQKFASVHKVFGASNVSKMLMEVPEAHRADTANSLVYEANVRLRDPVYGCMGAISALQQQVQSM 153 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ae++++++e Kaladp0048s0971.1.p 154 QAEINAIRAE 163 *****99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MSRERDKSSQ FSDELEKRIK RSASVGATET ITSEYNSASD QMIVGRRQML GSPGRRTRLN 60 TITPCAACKL LRRRCAQECP FFPYFSPHEP QKFASVHKVF GASNVSKMLM EVPEAHRADT 120 ANSLVYEANV RLRDPVYGCM GAISALQQQV QSMQAEINAI RAEILNYKLR EEANGIVTTN 180 SYSNYMTSNF IPPSPPWANI TVASLTPRPP SSSVVAATSA SHLLTTTTSS SVSVYTNQSS 240 IRNVKMGYSN SIVNENVRYL D* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-71 | LBD family protein |