PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0026.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 707aa    MW: 77248.4 Da    PI: 7.9844
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0026.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24107208199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kaladp0048s0026.1.p 107 FAKTLTQSDANNGGGFSVPRYCAETMfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 194
                          89*********************999****997556555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            +++++el+v+++r+
  Kaladp0048s0026.1.p 195 --RTESGELCVGIRRA 208
                          ..5599********97 PP
2Auxin_resp1163.2e-38278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa++a+++++FevvY+Pra+t+eF+v ++ v++a+++++++GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Kaladp0048s0026.1.p 278 AATSAAKGQPFEVVYYPRACTPEFCVAASAVKAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADPIRWPNSPWRLLQ 361
                          68999*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MERSLDSQLW HACAGGMVQM PKVNSRVFYF PQGHAEHAQA SLDFGVSPKV GPLVPCRVAS  60
VQFLADPETD EVYAKIRLVP VGNREMEFDV DDLGSRGPES VDKPASFAKT LTQSDANNGG  120
GFSVPRYCAE TMFPRLDYTA DPPVQTVVAK DVHGEIWKFR HIYRGTPRRH LLTTGWSTFV  180
NQKKLVAGDS IVFLRTESGE LCVGIRRAKR GIESGSGGVG SQSGWNASPG HFISPYGGGG  240
GGYSVFLRDD ENGFLRNGCS EGGLKTNKKV KAESVIEAAT SAAKGQPFEV VYYPRACTPE  300
FCVAASAVKA AMRIQWCPGM RFKMPFETED SSRISWFMGT VSSVQVADPI RWPNSPWRLL  360
QVTWDEPDLL QNVNRVSPWL VELVSNMPVM NMSPFSPPRK KLRFPPHPDF PLDGPLSLSS  420
FSGNNLGPGS SLCCLTDSTP PSIQGARHAQ FGISLSDIHF NNKLHSSSGM FPPRVNQFPR  480
FFSNIISSNE SGSCLLSIGN SNHTIEKPKD SKKQPFVLFG QPILTEQEIT LRHSSESTAK  540
ALTRNNSSDD YQMNHEKLHL TSLELRRSLS DTSSHAGFSR LFGFPSDEHN MGSGLCKVFM  600
GDDNVGRTLD LSAIQSYQEL CLKLAELFGI EKPGALSHIL YHDAMGALKR IGDEPFSDFR  660
RSAKNLTITV DPGNSNGREQ RVLGLGKAES GLCSSKTATG PLSILA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein