PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0040s0399.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 17350.5 Da PI: 7.9694 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.9 | 1.7e-43 | 18 | 116 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Kaladp0040s0399.1.p 18 PCAACKFLRRKCLPGCTFAPYFPPEEPTKFANVHKIFGASNVSKLLNEISPHQREDAVNSLAYEAEARIKDPVYGCVGSISVLQRQVLKL 107 7***************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++++ Kaladp0040s0399.1.p 108 QKELEATNA 116 ****99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MASSSSSSPS PCYYSNSPCA ACKFLRRKCL PGCTFAPYFP PEEPTKFANV HKIFGASNVS 60 KLLNEISPHQ REDAVNSLAY EAEARIKDPV YGCVGSISVL QRQVLKLQKE LEATNADLMR 120 YACDGSLAGV LGTGSGSRVS DGSSSASFDQ GSGCFVRFSS SNP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-65 | LBD family protein |