PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0641.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22988.2 Da PI: 5.5212 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.8 | 2.8e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkCa++C++apyf+ +q + +f +vh++FGasn +kll +lp + r+ a+ ++ yeA ar++dP+yG+v+++l lqqq+ q Kaladp0039s0641.1.p 7 SCGACKFLRRKCATECIFAPYFCYDQaAVHFSAVHRVFGASNFSKLLLHLPMHSRSVAAMTVSYEALARMHDPIYGCVAHVLLLQQQVVQ 96 6************************9789************************************************************* PP DUF260 90 lkaelallkee 100 l++e+++l+++ Kaladp0039s0641.1.p 97 LEKEIEMLEKQ 107 *****999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MTGLGSSCGA CKFLRRKCAT ECIFAPYFCY DQAAVHFSAV HRVFGASNFS KLLLHLPMHS 60 RSVAAMTVSY EALARMHDPI YGCVAHVLLL QQQVVQLEKE IEMLEKQMAM AWFDISGAAA 120 APSSTQSANI DFYGLQVETT ELDMDVRGYS TAQQTSSQLL TASANAAAID QRSREEKSWF 180 LSPDPMGQES FMHCYAESFA ETLNTQVI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-48 | LBD family protein |