PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0032s0389.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21190.1 Da PI: 6.8755 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf ++q +++fa++hk+FGasn +k+l ++p+++r da+ s++yeA ar+rdPvyG+v+ i++lqqq+ + Kaladp0032s0389.1.p 15 PCGACKFLRRKCVSGCVFAPYFQSDQgAAHFAAIHKVFGASNASKMLLSIPPQHRLDAVVSMCYEALARVRDPVYGCVAQIFALQQQVLN 104 7***********************9989************************************************************** PP DUF260 90 lkaelallkee 100 l+ae+a ++++ Kaladp0032s0389.1.p 105 LQAEVACTQAK 115 ******99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MSSNWGGGSN TIIGPCGACK FLRRKCVSGC VFAPYFQSDQ GAAHFAAIHK VFGASNASKM 60 LLSIPPQHRL DAVVSMCYEA LARVRDPVYG CVAQIFALQQ QVLNLQAEVA CTQAKLATLR 120 PPQQPYPSDQ SLSGFPSMRC EDALQMQSWS PAELVDQGEV DDGDQEVELQ SLARQLMSRH 180 FSSSGFTFRP PTSSP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-55 | LBD family protein |