PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0028s0048.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 347aa MW: 37947.3 Da PI: 5.6943 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.6 | 1.8e-42 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC+++C++apyfp e+p+kf nvhk+FG snv+k+l++l++ +r+da++sl+yeAear+rdP+yG+vg+i+ lqq+l+q Kaladp0028s0048.2.p 6 PCAACKFQRRKCTPECIFAPYFPPEDPQKFVNVHKVFGGSNVSKILSDLNPAQRDDAARSLAYEAEARLRDPIYGCVGLISYLQQRLKQI 95 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + ++ ++++e Kaladp0028s0048.2.p 96 QIDITEARKE 105 ***9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MSSNAPCAAC KFQRRKCTPE CIFAPYFPPE DPQKFVNVHK VFGGSNVSKI LSDLNPAQRD 60 DAARSLAYEA EARLRDPIYG CVGLISYLQQ RLKQIQIDIT EARKELATYV GPSAMLMTIP 120 QHGYGQMMYH PQQPQMMGNP SSSSSALPYT HLMGTPPVYG PGTSQQLVIR DQQQQQLMGG 180 GNPSSSASAL PYTSLIPSMM GAGSSSQPLL TREQSQLHGV DPQQYGAVAA TEQHELMRNY 240 ELQQQQQQDY LQYEPGGGPI HGSGFIQMAA DETGGGPSLA LGVNYDNPYN QIQQQHQHDI 300 VHQALQAQLA LQSQLQHAEH VLQTPLDQQP QNKAESDEDR SADPSS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-57 | LBD family protein |