PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0019s0135.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22352.4 Da PI: 10.406 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.7 | 2.4e-31 | 30 | 79 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+ Kaladp0019s0135.2.p 30 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 79 79***********************************************8 PP | |||||||
2 | K-box | 106 | 4.5e-35 | 97 | 191 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ss++ + e++++ +qqe++kL k+i+++q+ +Rh++Ge +++L++keL++Le++Lek+l+++RskKn+ll++ ie +qk+e elq++n++ Kaladp0019s0135.2.p 97 SSNTGTVETNTQFYQQEASKLGKQIREMQNANRHIQGEAIGNLTVKELKNLESRLEKGLSRVRSKKNDLLFADIEFMQKREMELQNANMY 186 667778999********************************************************************************* PP K-box 94 Lrkkl 98 Lr+k+ Kaladp0019s0135.2.p 187 LRAKV 191 **996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MEFPNFHHNQ SSEGSSSLRK LAGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC 60 DAEVALVVFS SRGRLYEYAN NSVRSTIERY KKASADSSNT GTVETNTQFY QQEASKLGKQ 120 IREMQNANRH IQGEAIGNLT VKELKNLESR LEKGLSRVRS KKNDLLFADI EFMQKREMEL 180 QNANMYLRAK VPISI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 2e-99 | MIKC_MADS family protein |