PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0052.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 843aa    MW: 94240.7 Da    PI: 6.3073
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0052.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-23148249199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++ +++a+e+      + k++ +++l+ +d++  +W++++i+r++++r++l++GW+ Fv++++L +gD ++F  
  Kaladp0016s0052.1.p 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHKTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 235
                          99*****************************63.4445569************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+v+v+r+
  Kaladp0016s0052.1.p 236 -RGENGELRVGVRRA 249
                          .449999*****996 PP
2Auxin_resp121.75.4e-40274356183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r+sGtvvg++d+dp rW++SkWr+Lk
  Kaladp0016s0052.1.p 274 AWHAISTGTMFTVFYKPRTSPTEFIVPYDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFSGTVVGIEDADPRRWRDSKWRCLK 356
                          89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MATSEVRSGR GESFSSGHSE PHDVAASRNV ADDGRDDAED ALYTELWHAC AGPLVTVPQV  60
GEHVFYFPQG HIEQVEASTN KVAEQEMPVY DLPSKILCRV LDVRLMAEPV TDEVFAHVVL  120
VPERNQDENA VKKEPPQPPK PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS  180
KQPPTQELVA KDLHKTEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG  240
ELRVGVRRAM RQQGNIPSSV ISSHSMHLGV LASAWHAIST GTMFTVFYKP RTSPTEFIVP  300
YDQYMESVKN NYSIGMRFKM RFEGEEAPEQ RFSGTVVGIE DADPRRWRDS KWRCLKVRWD  360
ETSTIHRPDR VSPWKIEPAL NPLALNPIPM PRPKRPRTNL LPLSPDSSVL TREGSSKVAL  420
EHPLTNGFLR VLQGQDISTL RANLAESNES ETIEKPRTWG LPIDEGRADV GSTPHRYLAE  480
NWLPLPRHET TYTDLLSGLA SHIESSHGYN LTFPDSAAAT SSIKKPSAED EDVLHETEDH  540
WSALPSELSL HLPESRMKYP VQGGYSLYQG HDSTVYGALE GRPMVNGHRA EHQPASWSMP  600
PPTYSTNIEW SRNSDPVTSS SPRQETSKPA DGSYKLFGIP LFGHHASSEP RMSAKNSADT  660
VLEGTNLLSP ECCLVDPGLK SGQPEDSNPR DIFTVSEQEK TFQNCQPISR EIQGKVQSGS  720
TRSCTKVHKQ GIALGRSVDL SKFNNYEQLK AELDRLFEFG GELLAARSNW LVVYTDDEGD  780
MMLAGDDPWQ EFCRMVQKIF IYTKDEVQKM NPRRTLGCSK IDGNPSSADA LDAVEVDISH  840
SL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein