PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0049.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 740aa    MW: 80391.2 Da    PI: 7.5398
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0049.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.3e-24173274199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kaladp0010s0049.1.p 173 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 261
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kaladp0010s0049.1.p 262 G--GDGILRLGVRRA 274
                          3..677778888875 PP
2Auxin_resp102.55.5e-34299380182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s G+R+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kaladp0010s0049.1.p 299 VINAISTRSVFNISYNPRGTSSDFIIPHSKFTRSLVHKFSCGTRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 380
                          5799*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MICAVEGLSE ILAMAATGRG LNLFDLNTAE EEDAAAGGSL SPSPSPSPTS TCSGVVPGST  60
GCVAPSVCLE LWHACVGPLV SLPKKNSLVV YFPQGQLECF GESPAVICGV PPHVFCRVLD  120
VKLHAEVDSD EVCAQVFLIP VAQEQLPQVD KTEVDGEDDD INCGSKSMTR HMFCKTLTAS  180
DTSTHGGFSV PRRAAEDCFP PLDYTLQRPS QELVAKDLHG REWKFRHIYR GQPRRHLLTT  240
GWSAFVNRKK LVSGDAVLFL RGGDGILRLG VRRAAQLKEK PPFPPIFREQ QSHGSFSAVI  300
NAISTRSVFN ISYNPRGTSS DFIIPHSKFT RSLVHKFSCG TRLKMCCETE DAAERRFTGA  360
VTGVSDLDPI GWPGSKWKCL LVEWDDSENN LHGGRVSPWE VEPAGFVVGC CMPAPSGSKR  420
GRNGLPSTIH NSPIPDGKGL PDFRESLRFQ KVLQGQEIMS LKPQNTQNHN LAESLSCYPG  480
TDSSRIGALG NKISRPYFGN PDFSFNNKGF GESQWFQRVL QGQEKTSNMP YGMISCTSSH  540
DELLGIFNGI ALPNFRQTAL LHDSNSQFHA AKSSVPVSSP SSVLMFPQAT SLVPNPCRVP  600
GLLEGRGIGN QGQVSPTRPY VGELPSSYIK DNFVRFESCI PRTQFNQQDL CGHGPRPALS  660
GSQKLVPSCK NSCRLFGISL TDKEHAPNVA DETILKANQL NTGPAFRITE RQFLAQHPTM  720
ALGCLQKLDS ASDAITYGI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-172ARF family protein