PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 268aa MW: 29313.4 Da PI: 4.914 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.9 | 2.2e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ad+dv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0008s0900.1.p 6 DTRFPAARIKKIMQADDDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSVHLKHCVQRYSIFDFLSEVVNK 86 5789************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DDDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQTGAK 60 TVSSVHLKHC VQRYSIFDFL SEVVNKVPDY SHSGTSGEVR TLSRRRKAAG DELTDSDEDS 120 KRSRLPEAGH AASGGRGRGR GRGRGRGRIG RVAEPDHNQQ DIEPESAFDA TQAADNKDRD 180 LPSDLTEEAD GLTNPAVGKF DLNAEIKENK STPASEMPDI LSEHPAIQQE KFPGWSLSEI 240 DRIGINPLQL GSTNNTLDDE DYDEEDG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 145 | RGRGRGRGRG |
2 | 136 | 146 | RGRGRGRGRGR |
3 | 138 | 147 | RGRGRGRGRG |
4 | 138 | 148 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-63 | NF-YC family protein |