PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0898.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 262aa MW: 28868 Da PI: 5.636 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.7 | 3e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0008s0898.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 86 5789************************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL KEVVNKVPDY NHSSTSGEVR AISRRRKATG DELSDSDEHS 120 KRSRLQETSH GTVGGKGRGR GRGRGRGRAG HMAGPDSVQH DFEPEPSMAN LDANDNKSRD 180 LASDSKEDDD GLTNLAVGKF DLNTEFKENN SMPALAIPDN LSAHPDNLQL SLSEMDRIEF 240 NTLQLGSMNS TFDDEDYDED G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 147 | RGRGRGRGRG |
2 | 138 | 148 | RGRGRGRGRGR |
3 | 140 | 149 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 9e-67 | NF-YC family protein |