PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0813.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 904aa    MW: 99586.2 Da    PI: 6.8153
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0813.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24130231199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Kaladp0008s0813.1.p 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI- 217
                          99*****************************86666675.9************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Kaladp0008s0813.1.p 218 -WNDKNQLLLGIRRA 231
                          .7888889***9997 PP
2Auxin_resp114.78.3e-38256338183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dp +WpnS+Wrs+k
  Kaladp0008s0813.1.p 256 AAHAAATNSRFSIFFNPRASPSEFVIPLAKYVKAVYqTRVSVGMRFRMLFETEESSVRRYMGTITGISDMDP-KWPNSHWRSVK 338
                          79********************************99799*********************************.********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    
MRQSGATGFS PQHAVQEGEK RTLNSELWHA CAGPLVSLPT VGSRVVYFPQ GHSEQVVATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQDQ KDPYLPAELG  120
SPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPCQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVLFIWND KNQLLLGIRR ATRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFSIFF NPRASPSEFV IPLAKYVKAV YQTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDMDPKWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP SGLPSLPGVK DDELGLNSPM MWLRGDGGLP MNYPAMGAGP  420
WMAPRLDASM LGLQTDMYQA MAAAALQEMR AVDPSKQMIP SSLVQIQQPQ SVANRSAHRI  480
SPHMLQQSQT LLPFSQCTQE YQYQGQSQSQ SHPHQQTQFL QHQIQQQTSF SNPPLQQQEQ  540
QQPPQQKNPN SVSASPRYVS SLSTSQSMTG QGMSNPSHSH AYTGLNRNSA DVTGGMISPL  600
HSLLGSCSQD ELPHLLNPPR TNQMVSASDW PAKRIAMDHE SLASATSQCI TTQVVQQRLG  660
HPPVNISPHS VSLPPFPGRE CTNDQEGNTD QQNHLLFGAN IEPSSLILQH GMLNLMGVGG  720
LNDSTTMPFV SSTFMRNSGP DFTLNRAMTP SNCIDESGYL QSAGNVGNLA SDTFVKVHKF  780
GSFGRSLDIT KFSSYQELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP  840
EFVSSVSCIK ILSPQEVQQM GKEGIALLNS APGQRISSIN CEDYTESGNK GGSGIASAGS  900
LDY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein