PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0090.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 674aa    MW: 75017.9 Da    PI: 6.688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0090.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.92.6e-25126226198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv+a++L +gD++vF   
  Kaladp0008s0090.1.p 126 FCKVLTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELVAKDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDSFVFL-- 213
                          99*****************************77777888*************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Kaladp0008s0090.1.p 214 RGDDGELRVGVRR 226
                          3489999****98 PP
2Auxin_resp90.72.5e-30251329182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          a+ha++ +++F+v+Y+Pr+  s+F+v+v+k+++a k+ + vG Rfkm+fe+eds+er +sGt+vg+ ++++ +W +SkWrsL
  Kaladp0008s0090.1.p 251 ASHAVTAQTMFQVYYKPRK--SQFIVSVNKYLEANKCGFGVGKRFKMRFEGEDSPERWFSGTIVGLDNISQ-QWADSKWRSL 329
                          689***************6..9**********************************************666.*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    
MMMPSRCTNS SGEGTGGDEG LYEELWKACA GPLVDVPRPG EKVYYFPQGH LEQLEASTNQ  60
ELDQRITMFK LPSKILCKVL NVYHLAEPET DEVYAQITLF PETEQTEPTK PDPCLPEPRR  120
RTIHSFCKVL TASDTSTHGG FSVLRKHATE CLPPLDMSQP TPTQELVAKD LHGVEWRFKH  180
IFRGQPRRHL LTTGWSTFVS AKRLVAGDSF VFLRGDDGEL RVGVRRLACQ QNNMPSVICS  240
QSIQLGVLAS ASHAVTAQTM FQVYYKPRKS QFIVSVNKYL EANKCGFGVG KRFKMRFEGE  300
DSPERWFSGT IVGLDNISQQ WADSKWRSLR VQWDEPAAIP RPDRVSPWEI ETLTPTVPAC  360
ISTAIPSKNK RLCMPGDMQV PETSNASGLW HHKPDNTNVT HFSSNNGSCI SRTYTDVGWL  420
SPQGHHSKLK AEHISSNGSS ANRQTDKSIH AAAWPAVMTQ TNLHMLKSNN DALFDSGEVR  480
KKLEAPTSCR LFGIELINPS PVEKPIVQPV CASVGSAEGN IPDTPSAAES EQNSELSKAF  540
KVKQLEQTKG KLSSSTSTRS RTKVQMQGVA VGRAVDLTTL EGYDHLIDEL EDMFEIKGEL  600
KPRNKWEIVF TDDEGDMMLV GDDPWPEFCS MVRRIFICSS QEMKNLRSRS NLPVPSIELG  660
EPTTMLSSDS TEN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein