PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0006s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 24111.2 Da PI: 5.2521 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.2 | 3.8e-56 | 38 | 142 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd Kaladp0006s0050.1.p 38 QLQMFWAYQrqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 127 89****9998899***************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprde+k Kaladp0006s0050.1.p 128 IFDFLVDIVPRDEIK 142 ************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MDSHHQQQQV GQQPPPPAPG VGAPAPFHHQ LQQQQQQQLQ MFWAYQRQEI EQVSDFKNHQ 60 LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI RSWLHAEENK RRTLQKNDIA 120 AAITRTDIFD FLVDIVPRDE IKEEVGIAGL VGGTVPFYYP AMGQPAGMMM GRPVGDPAGG 180 GYLAPPSQAW QSVWQTAGAD EGAYGSGGGN GGPQQGNVDG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-81 | NF-YC family protein |