PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0002s0088.2.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 627aa    MW: 68420.4 Da    PI: 6.912
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0002s0088.2.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23119220199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kaladp0002s0088.2.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVSQKKLVAGDSIVFL 206
                          89****************************996555555..89*********************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Kaladp0002s0088.2.p 207 --RAECGDLCVGIRRA 220
                          ..459*********97 PP
2Auxin_resp113.32.2e-37287370183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+ ++ FevvY+Prast+eF+v+++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Kaladp0002s0088.2.p 287 AARLAADGQLFEVVYYPRASTPEFCVRASLVNAALRIRWCSGMRFKMAFETEDSSRISWfMGTISSVQIADPIRWPNSPWRLLQ 370
                          6788999***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    
MIPFMDSKDK ESEKCLDSQL WHACAGGMVQ MPALNSRVYY FPQGHAEHAS GNVDFRQLSR  60
IPAYVLCRVL AVKFMADTET DEVYAKIRLV PVRVNDREYD EVGLSGLNCS EGLEKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGEIWK FRHIYRGTPR  180
RHLLTTGWST FVSQKKLVAG DSIVFLRAEC GDLCVGIRRA KRGIFGESES ASGWNPAGGN  240
CSMPYGGLLS SFLRDDEKKL LGNSECLSSG SGCVVKGKVS AESVVEAARL AADGQLFEVV  300
YYPRASTPEF CVRASLVNAA LRIRWCSGMR FKMAFETEDS SRISWFMGTI SSVQIADPIR  360
WPNSPWRLLQ VSWDEPDLLH NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQHPEIQ  420
MNDQLGVASF SGSLLGPSSA YSCLDLVPAG MQGARHAPFG ASLSDIHNSL LSSFFPPYFP  480
PIDHSRAQTR DFNCSSAVQR PGKNEEASCS LTIGNAAPDE AQKSDEAKAS PFVLFGRTIL  540
TEQQISVSGS GDITGVDMTR GSSVGSGSTS QPQEPSTQNR TYSLPDKGSE SESDLGTGRC  600
KILAEAVQLQ TLEMSDSVTS PKQQKN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein