PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0002s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 627aa MW: 68420.4 Da PI: 6.912 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF Kaladp0002s0088.1.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVSQKKLVAGDSIVFL 206 89****************************996555555..89*********************************************** PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++ l+v+++r+ Kaladp0002s0088.1.p 207 --RAECGDLCVGIRRA 220 ..459*********97 PP | |||||||
2 | Auxin_resp | 113.3 | 2.2e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ ++ FevvY+Prast+eF+v+++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Kaladp0002s0088.1.p 287 AARLAADGQLFEVVYYPRASTPEFCVRASLVNAALRIRWCSGMRFKMAFETEDSSRISWfMGTISSVQIADPIRWPNSPWRLLQ 370 6788999***************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence |
MIPFMDSKDK ESEKCLDSQL WHACAGGMVQ MPALNSRVYY FPQGHAEHAS GNVDFRQLSR 60 IPAYVLCRVL AVKFMADTET DEVYAKIRLV PVRVNDREYD EVGLSGLNCS EGLEKPASFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGEIWK FRHIYRGTPR 180 RHLLTTGWST FVSQKKLVAG DSIVFLRAEC GDLCVGIRRA KRGIFGESES ASGWNPAGGN 240 CSMPYGGLLS SFLRDDEKKL LGNSECLSSG SGCVVKGKVS AESVVEAARL AADGQLFEVV 300 YYPRASTPEF CVRASLVNAA LRIRWCSGMR FKMAFETEDS SRISWFMGTI SSVQIADPIR 360 WPNSPWRLLQ VSWDEPDLLH NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQHPEIQ 420 MNDQLGVASF SGSLLGPSSA YSCLDLVPAG MQGARHAPFG ASLSDIHNSL LSSFFPPYFP 480 PIDHSRAQTR DFNCSSAVQR PGKNEEASCS LTIGNAAPDE AQKSDEAKAS PFVLFGRTIL 540 TEQQISVSGS GDITGVDMTR GSSVGSGSTS QPQEPSTQNR TYSLPDKGSE SESDLGTGRC 600 KILAEAVQLQ TLEMSDSVTS PKQQKN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |