PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0216.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 788aa MW: 86403.7 Da PI: 7.3295 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L gD v+F Kaladp0001s0216.5.p 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 253 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Kaladp0001s0216.5.p 254 -RGESGELRLGIRRA 267 .449999*****996 PP | |||||||
2 | Auxin_resp | 109.1 | 4.6e-36 | 292 | 373 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++ G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L Kaladp0001s0216.5.p 292 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 373 68999****************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence |
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW 60 HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLAN 120 KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK STPHMFCKTL TASDTSTHGG 180 FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTSGWSLFVS 240 QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG NQSSLPTVLS SVANAILTKN 300 VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF EMDDSPERRC SGIVTGMGDL 360 DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL PPPMSFHGSP QLKKLRTCLQ 420 SSLQSGLADD LSTAGGSGFL DLEESMRSSS KVLRGQENSG FRSPYLLNQP LGSSKPSQAT 480 VLEGLNIQST GYTTFGKSDV FPTVLQGQEV CPYSAWRKPS IGCCNLSSTH QRPEPSFYPV 540 ASAGSRSVYF PLHSGIQKEM QGPAVSLSSR FAGGSGPFGR PPVYNGMDID EPRRFVPMNA 600 QKVPVDAAAS LPHSLEAAAK DGRNETSSAA PTACRLFGIS LTGETSTQNA SKRSCTKVHK 660 QGSMVGRAID LSKLNGYTDL LFELEWLFAM EGLLRDPEKG WRILYTDSEN DMMVVGDDPW 720 HEFCEVVSKI HIYTKDEVEK LNIGVVASDD TQSCLEEAPE GAGVSKSSSV GQPESYPTKK 780 KGLERLN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |