PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0001s0216.4.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ARF

Protein Properties

Length: 787aa MW: 86332.6 Da PI: 7.3295

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0001s0216.4.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	166	267	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L gD v+F Kaladp0001s0216.4.p 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 253 99**************************963.3445679********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Kaladp0001s0216.4.p 254 -RGESGELRLGIRRA 267 .449999***996 PP
2	Auxin_resp	109.1	4.6e-36	292	373	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++ G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L Kaladp0001s0216.4.p 292 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 373 68999****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW 60 HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLAN 120 KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK STPHMFCKTL TASDTSTHGG 180 FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTSGWSLFVS 240 QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG NQSSLPTVLS SVANAILTKN 300 VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF EMDDSPERRC SGIVTGMGDL 360 DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL PPPMSFHGSP QLKKLRTCLQ 420 SSLQSGLADD LSTGGSGFLD LEESMRSSSK VLRGQENSGF RSPYLLNQPL GSSKPSQATV 480 LEGLNIQSTG YTTFGKSDVF PTVLQGQEVC PYSAWRKPSI GCCNLSSTHQ RPEPSFYPVA 540 SAGSRSVYFP LHSGIQKEMQ GPAVSLSSRF AGGSGPFGRP PVYNGMDIDE PRRFVPMNAQ 600 KVPVDAAASL PHSLEAAAKD GRNETSSAAP TACRLFGISL TGETSTQNAS KRSCTKVHKQ 660 GSMVGRAIDL SKLNGYTDLL FELEWLFAME GLLRDPEKGW RILYTDSEND MMVVGDDPWH 720 EFCEVVSKIH IYTKDEVEKL NIGVVASDDT QSCLEEAPEG AGVSKSSSVG QPESYPTKKK 780 GLERLN*

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW  60
HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLAN  120
KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK STPHMFCKTL TASDTSTHGG  180
FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTSGWSLFVS  240
QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG NQSSLPTVLS SVANAILTKN  300
VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF EMDDSPERRC SGIVTGMGDL  360
DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL PPPMSFHGSP QLKKLRTCLQ  420
SSLQSGLADD LSTGGSGFLD LEESMRSSSK VLRGQENSGF RSPYLLNQPL GSSKPSQATV  480
LEGLNIQSTG YTTFGKSDVF PTVLQGQEVC PYSAWRKPSI GCCNLSSTHQ RPEPSFYPVA  540
SAGSRSVYFP LHSGIQKEMQ GPAVSLSSRF AGGSGPFGRP PVYNGMDIDE PRRFVPMNAQ  600
KVPVDAAASL PHSLEAAAKD GRNETSSAAP TACRLFGISL TGETSTQNAS KRSCTKVHKQ  660
GSMVGRAIDL SKLNGYTDLL FELEWLFAME GLLRDPEKGW RILYTDSEND MMVVGDDPWH  720
EFCEVVSKIH IYTKDEVEKL NIGVVASDDT QSCLEEAPEG AGVSKSSSVG QPESYPTKKK  780
GLERLN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein