PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0001s0216.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 807aa MW: 88487 Da PI: 7.4391 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 186 | 287 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L gD v+F Kaladp0001s0216.1.p 186 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 273 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Kaladp0001s0216.1.p 274 -RGESGELRLGIRRA 287 .449999*****996 PP | |||||||
2 | Auxin_resp | 109.1 | 4.7e-36 | 312 | 393 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++ G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L Kaladp0001s0216.1.p 312 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 393 68999****************************************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 807 aa Download sequence |
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW 60 HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLVS 120 TISTSDIYSI SCKCYSSKAN KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK 180 STPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH 240 IYRGQPRRHL LTSGWSLFVS QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG 300 NQSSLPTVLS SVANAILTKN VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF 360 EMDDSPERRC SGIVTGMGDL DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL 420 PPPMSFHGSP QLKKLRTCLQ SSLQSGLADD LSTGGSGFLD LEESMRSSSK VLRGQENSGF 480 RSPYLLNQPL GSSKPSQATV LEGLNIQSTG YTTFGKSDVF PTVLQGQEVC PYSAWRKPSI 540 GCCNLSSTHQ RPEPSFYPVA SAGSRSVYFP LHSGIQKEMQ GPAVSLSSRF AGGSGPFGRP 600 PVYNGMDIDE PRRFVPMNAQ KVPVDAAASL PHSLEAAAKD GRNETSSAAP TACRLFGISL 660 TGETSTQNAS KRSCTKVHKQ GSMVGRAIDL SKLNGYTDLL FELEWLFAME GLLRDPEKGW 720 RILYTDSEND MMVVGDDPWH EFCEVVSKIH IYTKDEVEKL NIGVVASDDT QSCLEEAPEG 780 AGVSKSSSVG QPESYPTKKK GLERLN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |