PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021301224.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46905.4 Da    PI: 10.2671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021301224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-17950142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    k+ien+  r +t+ kR +g+ KKA+E SvLCd++v++iif +
  XP_021301224.1  9 KFIENEKARATTLRKRMKGLKKKAYEFSVLCDVKVCMIIFEP 50
                    79*************************************966 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MARGKMIMKF IENEKARATT LRKRMKGLKK KAYEFSVLCD VKVCMIIFEP KLKGGPAKVE  60
VWPSDPVQVK SIVDKYKIEV ASDAQKKISS LYDFFNVRKR GVQNEAAQVR KANFKAKFQT  120
WDDRIEDFSP EQIASFLTKL DLNLEVVKKK ITMMKGDDWN HTLSAKSRIV GGFNTQSRPH  180
PSDGIPASFH PKNLNHSENH IQVHAPVMIL NHLDHVQAFA RKNLDFGVSR EQPPVPAKPL  240
NIQLPSHSPA DEALVKLSLS LNPIENSMNP IDKSRRMSMM NHLDFRLQSG IASSSSKIPN  300
KVLYNPPPSL SVCHDPRIAM PSNVMFNSPT IPVLHHDPRT AMQDDVMFKD PRAFQTRFYV  360
PSMQPEAVHS GQQLMMPLMF PQMHPFQFTD FHLDINEYEM QSKKQRLQII G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.19e-20M-type_MADS family protein