PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021301085.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 582aa MW: 67004.9 Da PI: 6.7465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021301085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.5e-26	111	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + +++r++ r gCka++ vk+ek+gkw+vt++++eHnH+l XP_021301085.1 111 KFYVEYARQVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTFGPDKKPRPSAREGCKATILVKMEKTGKWVVTRFVKEHNHPLI 200 6********************************************9**************************************95 PP
2	FAR1	78.1	1.7e-24	402	492	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+++eHnH+++ XP_021301085.1 402 EFYVVYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSFM 492 6****************************************99983333.244899*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MSEPRSNELG ASFYTGDNPR NSLSGQSTFQ SNGEIHHFIL RLVFLSASDQ RIIASQIIFG 60 CLSETVDSMD LDKEVGTVDS SVEEKTAEQE VREIVEPYVG MEFESEDDAR KFYVEYARQV 120 GFVVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTFGP DKKPRPSARE GCKATILVKM 180 EKTGKWVVTR FVKEHNHPLI ATANGFSTTG DKDKKIEELT MELAHQEQLC SAYREKLFTF 240 MNNVEEQTEE LSSKIQVIVD NVRKLESETQ RFSHHRYRKM VILLEGENLF ARIRSTLLEA 300 AARNQRPAAK QLKWSLLVDR TMCIMESSSS QGIDSDESAR CLQVENFDEQ ELVDHELSDN 360 IDLCMGEVDK IIEESTESLP LLSNAVEPCI GMEFKSRDAA REFYVVYGRR TGFTVRIHHN 420 RRSRINNMVI GQDFVCSKEG FREKKYMYRK DRVLPPPPIT REGCPAMLRL ALRDGVKWVV 480 TKFVKEHNHS FMSPGKVPWR GSAKNLISED EKDQRIRELT QELNNEKQKC KRRCAAYQEQ 540 LRTILKFVEE HTDQLSKRVQ DIVENIRELE DAQLEDSDCS YV

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MSEPRSNELG ASFYTGDNPR NSLSGQSTFQ SNGEIHHFIL RLVFLSASDQ RIIASQIIFG  60
CLSETVDSMD LDKEVGTVDS SVEEKTAEQE VREIVEPYVG MEFESEDDAR KFYVEYARQV  120
GFVVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTFGP DKKPRPSARE GCKATILVKM  180
EKTGKWVVTR FVKEHNHPLI ATANGFSTTG DKDKKIEELT MELAHQEQLC SAYREKLFTF  240
MNNVEEQTEE LSSKIQVIVD NVRKLESETQ RFSHHRYRKM VILLEGENLF ARIRSTLLEA  300
AARNQRPAAK QLKWSLLVDR TMCIMESSSS QGIDSDESAR CLQVENFDEQ ELVDHELSDN  360
IDLCMGEVDK IIEESTESLP LLSNAVEPCI GMEFKSRDAA REFYVVYGRR TGFTVRIHHN  420
RRSRINNMVI GQDFVCSKEG FREKKYMYRK DRVLPPPPIT REGCPAMLRL ALRDGVKWVV  480
TKFVKEHNHS FMSPGKVPWR GSAKNLISED EKDQRIRELT QELNNEKQKC KRRCAAYQEQ  540
LRTILKFVEE HTDQLSKRVQ DIVENIRELE DAQLEDSDCS YV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-70	FAR1 family protein