PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300783.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 385aa    MW: 42428.1 Da    PI: 6.7588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09218265455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_021300783.1 218 SHSLAERARREKISKKMKCLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 265
                     8**************************....999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MSHGLHSLET CTYNGMDMTV LERQQARLKW QQLQNYGVQN NNPTELCASS VPQIQGFLGS  60
SLGSGQLVEM KKPEVYLGSD DFPKFVNFSV AGPEFSASKM DLVPPEDAAD YCISGTSSCQ  120
MTAFQTAVMN EEREDVILKK MESTTGRESF SKRKAEAVQD DKCKDKRVKG EVEGESEVKT  180
KCSTEVSRNS SKENSKASEV QKPDYIHVRA RRGQATDSHS LAERARREKI SKKMKCLQDL  240
VPGCNKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP SVEFNVDNLP AKEFPAYVAN  300
FPAAAKSPAM ANLACLQFNP LQKAVSCMLD ATMHPPQTAT EGIASASVSI PEQALSSSCI  360
TQLQPFSTWN TDPRGLYNVY NMGFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.22e-68bHLH family protein