PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300744.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 420aa MW: 48533.2 Da PI: 9.7833

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.7	1.2e-19	33	120	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fk++ ++ ++l++p+kf++++ ++ s t+ l+ +sg W v++ ++ + +v+++GW++Fvk++ L + DfvvF++dg+s+f +v + XP_021300744.1 33 FKIM--IGDFR-NQLRIPRKFMSNFREN--LSGTVYLRGPSGFMWAVEV--QRMFDDVVFGNGWQNFVKDHSLADADFVVFRYDGNSTF--NVVI 118 5555..44454.56******877755..788************..99999***************************9999..7877 PP E- CS B3 97 fr 98 f+ XP_021300744.1 119 FD 120 76 PP
2	B3	39.4	1.1e-12	305	386	5	88
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++p +v + + + k ++ h ++ + + l ++ ++W v++ ++ r +t+GW +Fv +n+L+e D++vF+l+++ + XP_021300744.1 305 MKPTHVCRAFTVNIREKWLDMHipDN-----VRIALLRvpPDEKRWPVRIMR--TKWRRGFTRGWAKFVLDNNLEEHDVCVFELSEEgK 386 55666666666666666666664222.....223332225899*****44..4444459********************987633 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MQSQGMAAKS QNCRMMEKHK YWKEFQSNRH QFFKIMIGDF RNQLRIPRKF MSNFRENLSG 60 TVYLRGPSGF MWAVEVQRMF DDVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD 120 LSGCEREGSY FVKKHTSACS NGRFGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGNGNT 180 SSKAVDTISQ LKATQEKHLR VGKSAIASEV IEILMDESEE SSGSAMEASE DWSNKSVSLK 240 CKSKTKQVGC LTNDSGKMKR PLDLPGSYNV YFISKRREIT EEEKQRPRRL AKHYSSTRPS 300 FSIVMKPTHV CRAFTVNIRE KWLDMHIPDN VRIALLRVPP DEKRWPVRIM RTKWRRGFTR 360 GWAKFVLDNN LEEHDVCVFE LSEEGKANKK SIGFNVVIFR VVDEIVPLTR FSNTQPNASD

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MQSQGMAAKS QNCRMMEKHK YWKEFQSNRH QFFKIMIGDF RNQLRIPRKF MSNFRENLSG  60
TVYLRGPSGF MWAVEVQRMF DDVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD  120
LSGCEREGSY FVKKHTSACS NGRFGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGNGNT  180
SSKAVDTISQ LKATQEKHLR VGKSAIASEV IEILMDESEE SSGSAMEASE DWSNKSVSLK  240
CKSKTKQVGC LTNDSGKMKR PLDLPGSYNV YFISKRREIT EEEKQRPRRL AKHYSSTRPS  300
FSIVMKPTHV CRAFTVNIRE KWLDMHIPDN VRIALLRVPP DEKRWPVRIM RTKWRRGFTR  360
GWAKFVLDNN LEEHDVCVFE LSEEGKANKK SIGFNVVIFR VVDEIVPLTR FSNTQPNASD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-34	B3 family protein