PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300632.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 353aa    MW: 39018 Da    PI: 4.812
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.82e-15189225135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_021300632.1 189 CHHCGISEklTPAMRRGPAGPRTLCNACGLMWANKGT 225
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MDTVNQRGLL ARPFGDEYDD GGFEGEEFSG AHKLVMNGVA SSVSHGNGVG GFVQATRTSE  60
LTIAFEGEVY VFPAVTPEKV QAVLLLLGGR GASTNVPSSE FLLQEKVKVV GGSSEDSKLS  120
RRIASLVRFR EKRNERCFEK KIRYTCRKEV AQRMHRKNGQ FASLKECYNS ADGSWDQSDS  180
TPESALRRCH HCGISEKLTP AMRRGPAGPR TLCNACGLMW ANKGTLRDLR KGGRNAHFDS  240
NEPETLTDTK RSTMEPENSF ANDDEQGSPE DTKPVHLDSV NHLIRSNEQE FAENSHPFPI  300
QVVNSSVNLD DEDMQETLEE LADASGSDFE IPSHFDEQVD IDDTNIGTEW PGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-59GATA family protein