PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300410.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 486aa MW: 53301.4 Da PI: 6.5127

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.1e-15	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk+ G g+W+++ + g+ R++k+c++rw ++l XP_021300410.1 19 KGPWTAAEDAILMEYVKKQGEGNWNAVQKNSGLMRCGKSCRLRWANHL 66 79******************************************9986 PP
2	Myb_DNA-binding	50.4	5.1e-16	72	115	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++ XP_021300410.1 72 KGSFSPEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 115 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MKSNSGVGSD RMISHGLKKG PWTAAEDAIL MEYVKKQGEG NWNAVQKNSG LMRCGKSCRL 60 RWANHLRPNL KKGSFSPEEE RIIIELHAKL GNKWARMAAQ LPGRTDNEIK NYWNTRMKRR 120 QRAGLPIYPQ EVGDDVAGIL LQQQQEQEQK IQQYQGRKRP NSSSLSSFLS SSQGRKHDYI 180 SSFSFLESMN LSSAGQNQAI SSCYSNLSHQ FKLYHNTGNN IGFALPLSPN SPFLPSSSDL 240 CNENITAQLS APSFQFIDSG GLDNTLSFSS LLMGAQTEPI DFVPGLKADL GSSQTPPRPT 300 TPASSYTSSG RVCLVAPSGN RNNYCELKGS SGLLDALLVE SRSLSRNERN KNGEEFPLVI 360 DKEKGVMDAA NAENEEEEVD ANKCVVETHR DNFSSCPSSI GLKPGDESIE EMNAMDDDLH 420 SLLNNFPSST PLPEWYTKST RISNNGSPSG NMVLDAQQNV SPAAATTADL DWSLGSCSWK 480 NMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MKSNSGVGSD RMISHGLKKG PWTAAEDAIL MEYVKKQGEG NWNAVQKNSG LMRCGKSCRL  60
RWANHLRPNL KKGSFSPEEE RIIIELHAKL GNKWARMAAQ LPGRTDNEIK NYWNTRMKRR  120
QRAGLPIYPQ EVGDDVAGIL LQQQQEQEQK IQQYQGRKRP NSSSLSSFLS SSQGRKHDYI  180
SSFSFLESMN LSSAGQNQAI SSCYSNLSHQ FKLYHNTGNN IGFALPLSPN SPFLPSSSDL  240
CNENITAQLS APSFQFIDSG GLDNTLSFSS LLMGAQTEPI DFVPGLKADL GSSQTPPRPT  300
TPASSYTSSG RVCLVAPSGN RNNYCELKGS SGLLDALLVE SRSLSRNERN KNGEEFPLVI  360
DKEKGVMDAA NAENEEEEVD ANKCVVETHR DNFSSCPSSI GLKPGDESIE EMNAMDDDLH  420
SLLNNFPSST PLPEWYTKST RISNNGSPSG NMVLDAQQNV SPAAATTADL DWSLGSCSWK  480
NMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-74	MYB family protein