PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300267.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 431aa MW: 48766.3 Da PI: 9.3048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	254	301	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq XP_021300267.1 254 KDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 301 6799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MLSLFYRSKR ASFRCQISMA FNVIYPVRLV VWSTIKQARA LKVGRNLGPV PALQEVVFLD 60 IKKVLDYHYR DSIQQALSVS KWDSSMEISS IRELPELGME DPNLFHQWQM NSLDELSILP 120 LAAAFGENLQ QSFSNHNYPA FNPKTSVEPS HTGIDRPVKQ HKTNSWNSCK PDTDISNLQS 180 AFHPNTFYFA SSNRMNPTGI VKPKEEAACS NSMESFPSDI LISQNSLIGS PNYMLKACHG 240 AKRVSTGNKI SQSKDHIMAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYLKQL 300 QEKVKTLEEQ TRKKTIESVV FVKKSQLVAD SDDFSSDENF SGPFDEPLPE IEARFCDKSV 360 LIRIHCEQRK GLPQKIMSEL EKCHLTIINS NVMTFGSSAL DITIVAQMDM EFCMAVKDLV 420 KKLRSAFKLI M

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MLSLFYRSKR ASFRCQISMA FNVIYPVRLV VWSTIKQARA LKVGRNLGPV PALQEVVFLD  60
IKKVLDYHYR DSIQQALSVS KWDSSMEISS IRELPELGME DPNLFHQWQM NSLDELSILP  120
LAAAFGENLQ QSFSNHNYPA FNPKTSVEPS HTGIDRPVKQ HKTNSWNSCK PDTDISNLQS  180
AFHPNTFYFA SSNRMNPTGI VKPKEEAACS NSMESFPSDI LISQNSLIGS PNYMLKACHG  240
AKRVSTGNKI SQSKDHIMAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAIKYLKQL  300
QEKVKTLEEQ TRKKTIESVV FVKKSQLVAD SDDFSSDENF SGPFDEPLPE IEARFCDKSV  360
LIRIHCEQRK GLPQKIMSEL EKCHLTIINS NVMTFGSSAL DITIVAQMDM EFCMAVKDLV  420
KKLRSAFKLI M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	265	ERKRRE
2	261	266	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-59	bHLH family protein