PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299946.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 346aa MW: 38246.3 Da PI: 10.0265

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	55	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ XP_021299946.1 55 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsarvNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 138 5***********************************85555555566678***************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDKETNQENP SLLSNNNANS ITKEDCSPKK HPGSTAVIGG GGGGSGSNDR LKRDEWSEGA 60 VSSLLEAYEN KWVLRNRAKL KGHDWEDVAR YVSARVNCTK SPKTQTQCKN KIESMKKRYR 120 SESATADGSS WPLYPRLDLL LRGSAPPPPQ PPPQLQSPSA VPQAPTPLST NPPLTLPEPS 180 MVVVLQHQQP PPSIPPQVPG TAQNSHGSNG VDRIPKEDGA GPKLSDHLSD KAAMETDSST 240 PALYSDKEKL RSKKLKMKME KKKRRKKEEW EIAESIRWLA EVVLKSEQAR METMREIEKM 300 RVEAEAKRGE MDLKRTEILA NTQLEIARLF AGSSKGVDSS LRIGRS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDKETNQENP SLLSNNNANS ITKEDCSPKK HPGSTAVIGG GGGGSGSNDR LKRDEWSEGA  60
VSSLLEAYEN KWVLRNRAKL KGHDWEDVAR YVSARVNCTK SPKTQTQCKN KIESMKKRYR  120
SESATADGSS WPLYPRLDLL LRGSAPPPPQ PPPQLQSPSA VPQAPTPLST NPPLTLPEPS  180
MVVVLQHQQP PPSIPPQVPG TAQNSHGSNG VDRIPKEDGA GPKLSDHLSD KAAMETDSST  240
PALYSDKEKL RSKKLKMKME KKKRRKKEEW EIAESIRWLA EVVLKSEQAR METMREIEKM  300
RVEAEAKRGE MDLKRTEILA NTQLEIARLF AGSSKGVDSS LRIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	264	KKLKMKMEKKKR
2	254	267	KLKMKMEKKKRRKK
3	261	265	KKKRR
4	261	266	KKKRRK
5	261	267	KKKRRKK
6	262	266	KKRRK
7	262	267	KKRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-104	Trihelix family protein