PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299854.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 412aa MW: 45829.7 Da PI: 7.5242

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.4e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ XP_021299854.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107 579*************************.89***********8888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_021299854.1 108 dGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 141 56667*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MDERNDTEKM EEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYKGRAAKGV KTDWMMHEFR LPSLTDSAPP KRFLDKSLPA NDSWAICRIF KKTNSTAQRA 180 LSQSWVSPIP ETSSMSDMPS RGSNSSQLSS ENLLLTTKTS SSAAQFNHDA DILQTSAAAF 240 SPLEHFLSYK PVTQMAGKPP QLPAISSTGD LTSFIFAPLE TSSFPAKSAA DVTSMLLNMS 300 SSMLGDYGKA ASDSTVHFGG GSQDHCNGCF PGTLPHEMQG NINNNGDHES SLLKNLNVMT 360 HVDDQWEPVR SIGFPFSLPM SMGDAWKPSM PWDSSCPSEM STSFSTTTKC YT

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MDERNDTEKM EEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYKGRAAKGV KTDWMMHEFR LPSLTDSAPP KRFLDKSLPA NDSWAICRIF KKTNSTAQRA  180
LSQSWVSPIP ETSSMSDMPS RGSNSSQLSS ENLLLTTKTS SSAAQFNHDA DILQTSAAAF  240
SPLEHFLSYK PVTQMAGKPP QLPAISSTGD LTSFIFAPLE TSSFPAKSAA DVTSMLLNMS  300
SSMLGDYGKA ASDSTVHFGG GSQDHCNGCF PGTLPHEMQG NINNNGDHES SLLKNLNVMT  360
HVDDQWEPVR SIGFPFSLPM SMGDAWKPSM PWDSSCPSEM STSFSTTTKC YT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein