PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021299739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 414aa MW: 46335.9 Da PI: 8.2746 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.7e-21 | 73 | 116 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+tgk XP_021299739.1 73 KLENTNGRQATYAKRKHGIMKKANELSILCDIEIILLMFSPTGK 116 6799**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence |
MLTISHPAFN LSLSVSLSLC LALSYLFVPF GSLFFGSIIK PVPPPSRRLD HALSTRRLIL 60 LIGMGRVKLK IKKLENTNGR QATYAKRKHG IMKKANELSI LCDIEIILLM FSPTGKPSLC 120 SGKRSSIEEI IAKFAQLTPQ ERAKRKLESL EALKKTFKKL DHDVNVHEFL GTSTQTIEDL 180 TNQARLLQTQ LSEIHRRLSC WTNLDKINNV EHLGQMEDTL KEYLNQIRAR KENLGKQQLL 240 SLECTSQFQT EMHVPFRMGA EQQLQPLAWI PNNDSRHMAL PEDSNLITHR DVECSASSSF 300 GSYSGYFGTA KSSELSSSGQ ENGILNDLSG NASLQLQLGG QYPYFSYNLN ILNDAKFPPV 360 AEMNFQETPA DYNVNGVLEG PRAGYDTTQG SWASNSGPCS VTMFDEPLYS RQLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-104 | M-type_MADS family protein |