PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299738.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 416aa MW: 46464.1 Da PI: 8.2746

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.7e-21	73	116	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+tgk XP_021299738.1 73 KLENTNGRQATYAKRKHGIMKKANELSILCDIEIILLMFSPTGK 116 6799**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MLTISHPAFN LSLSVSLSLC LALSYLFVPF GSLFFGSIIK PVPPPSRRLD HALSTRRLIL 60 LIGMGRVKLK IKKLENTNGR QATYAKRKHG IMKKANELSI LCDIEIILLM FSPTGKPSLC 120 SGKRSSIEEI IAKFAQLTPQ ERAKRKLESL EALKKTFKKL DHDVNVHEFL GTSTQTIEDL 180 TNQARLLQTQ LSEIHRRLSC WTNLDKINNV EHLGQMEDTL KEYLNQIRAR KENLGKQQLL 240 SLECTSQFQT EMHVPFRMGA EQQLQPLAWI PNNDSRHMAL PEDSNLITHR DVECSASSSF 300 GSYSGYFGTA KSSELSSSGQ ENGILNDLSG NASLQLQLGG QYPYFSYNLN ILNDAKFPPV 360 AEMNFQETPA DYNVNGVLEG PRAGYDTTQG SWASNSGPCS VTMFDEPLYS RVSISP

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MLTISHPAFN LSLSVSLSLC LALSYLFVPF GSLFFGSIIK PVPPPSRRLD HALSTRRLIL  60
LIGMGRVKLK IKKLENTNGR QATYAKRKHG IMKKANELSI LCDIEIILLM FSPTGKPSLC  120
SGKRSSIEEI IAKFAQLTPQ ERAKRKLESL EALKKTFKKL DHDVNVHEFL GTSTQTIEDL  180
TNQARLLQTQ LSEIHRRLSC WTNLDKINNV EHLGQMEDTL KEYLNQIRAR KENLGKQQLL  240
SLECTSQFQT EMHVPFRMGA EQQLQPLAWI PNNDSRHMAL PEDSNLITHR DVECSASSSF  300
GSYSGYFGTA KSSELSSSGQ ENGILNDLSG NASLQLQLGG QYPYFSYNLN ILNDAKFPPV  360
AEMNFQETPA DYNVNGVLEG PRAGYDTTQG SWASNSGPCS VTMFDEPLYS RVSISP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-105	M-type_MADS family protein