PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299731.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 386aa MW: 42462 Da PI: 7.2852

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l +++++G g+W++ +++ g+ R++k+c++rw +yl XP_021299731.1 14 RGPWTAEEDKILTAYIQEHGHGSWRALPEKAGLQRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	53	8.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++++++++++lG++ W++ a++++ +Rt++++k++w+++l XP_021299731.1 67 RGKFSSQEEQIIIQLHALLGNR-WSAMAAHLP-KRTDNEIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGRSPCFKKE GLKRGPWTAE EDKILTAYIQ EHGHGSWRAL PEKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SSQEEQIIIQ LHALLGNRWS AMAAHLPKRT DNEIKNHWNT HLKKRLIKMG 120 IDPMTHKPRA DASIFPSGPG KSASNLTHMA QWESARLEAE ARLVRESKQV VSNPIQPKTQ 180 FSPTSGQLIK DIAAATPGRP RCLDVLKAWQ GVVAGMFAFS SQDLGSPTST LSFPNGTVRA 240 PVNGLAGRTD GEMGLHESAS TGWRGTASTD LDGQDSLKCV DHMSNQMQEL EEKILDSFVE 300 LQHVTDSAGD ALFEDSFRIG NENVPLADIM EDLSDALIFN SGVLNSSMGD QKSIESCNGN 360 MVENSNCWNS VLNFVNSSPC GSPVFC

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGRSPCFKKE GLKRGPWTAE EDKILTAYIQ EHGHGSWRAL PEKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SSQEEQIIIQ LHALLGNRWS AMAAHLPKRT DNEIKNHWNT HLKKRLIKMG  120
IDPMTHKPRA DASIFPSGPG KSASNLTHMA QWESARLEAE ARLVRESKQV VSNPIQPKTQ  180
FSPTSGQLIK DIAAATPGRP RCLDVLKAWQ GVVAGMFAFS SQDLGSPTST LSFPNGTVRA  240
PVNGLAGRTD GEMGLHESAS TGWRGTASTD LDGQDSLKCV DHMSNQMQEL EEKILDSFVE  300
LQHVTDSAGD ALFEDSFRIG NENVPLADIM EDLSDALIFN SGVLNSSMGD QKSIESCNGN  360
MVENSNCWNS VLNFVNSSPC GSPVFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-97	MYB family protein