PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299674.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 368aa MW: 41041.5 Da PI: 6.8306

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++l +++++G g+W+t +++ g++R++k+c++rw +yl XP_021299674.1 14 RGTWTAEEDQKLTAYIQLHGHGSWSTLPEKAGLKRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	53.1	7.2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ ++++++ lG++ W++Ia++++ +Rt++++k++w+++l XP_021299674.1 67 RGKFSLQEEQTIIQLHAFLGNR-WSAIAAHLP-KRTDNEIKNHWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGSSKCCEKE GFKRGTWTAE EDQKLTAYIQ LHGHGSWSTL PEKAGLKRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHAFLGNRWS AIAAHLPKRT DNEIKNHWNT HLKKRLIKMG 120 IDPMTHKPRI DALGFPTGHG GIDSNLSHMA QWERARLEAE ARSARISTNK PAVPNHVQPK 180 TSQLGCLIPR PKCLDVLKAW QGLVTGMLSF PDRDDLESPG SISNFSDGRF QVPTAGINQK 240 AAGEGTLIPC IATNSYTYNE LDDVGNWKRC EKFNQMQEFE EALEGRMCST EDAGFMDSIY 300 VEGNDYEVIA NIMGDSPGTL VGVPVSYSSM ELEISNESCS IGCMVDNGSY WDPTLKFMNA 360 SSSDSPLF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGSSKCCEKE GFKRGTWTAE EDQKLTAYIQ LHGHGSWSTL PEKAGLKRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHAFLGNRWS AIAAHLPKRT DNEIKNHWNT HLKKRLIKMG  120
IDPMTHKPRI DALGFPTGHG GIDSNLSHMA QWERARLEAE ARSARISTNK PAVPNHVQPK  180
TSQLGCLIPR PKCLDVLKAW QGLVTGMLSF PDRDDLESPG SISNFSDGRF QVPTAGINQK  240
AAGEGTLIPC IATNSYTYNE LDDVGNWKRC EKFNQMQEFE EALEGRMCST EDAGFMDSIY  300
VEGNDYEVIA NIMGDSPGTL VGVPVSYSSM ELEISNESCS IGCMVDNGSY WDPTLKFMNA  360
SSSDSPLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-84	MYB family protein