PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299613.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 372aa MW: 41172.2 Da PI: 7.2617

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_021299613.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	8.2e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_021299613.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKT DALGSASGNP KDAANLSHMA QWESARLEAE ARLVRESKLV SNPPQNQHGS 180 ASSSAAPLSI NAVAPATRPQ CLDVLKAWQG VVTGLFTFNS DNLQSPTSTL NFMENTLPMS 240 SVGFNDNFVG NSINPCEGDG IVKDSGGNDW KCLEKSSQIP ELKERLDNSM GLHEMAYSSE 300 SAWFQDSYRA ENMMEGYSDI MVCDSVHQQN SSMAPGENLS GTSYPSSFEE NKNYWNSILN 360 LVNASPSGSP VF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT DALGSASGNP KDAANLSHMA QWESARLEAE ARLVRESKLV SNPPQNQHGS  180
ASSSAAPLSI NAVAPATRPQ CLDVLKAWQG VVTGLFTFNS DNLQSPTSTL NFMENTLPMS  240
SVGFNDNFVG NSINPCEGDG IVKDSGGNDW KCLEKSSQIP ELKERLDNSM GLHEMAYSSE  300
SAWFQDSYRA ENMMEGYSDI MVCDSVHQQN SSMAPGENLS GTSYPSSFEE NKNYWNSILN  360
LVNASPSGSP VF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-118	MYB family protein