PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299611.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Whirly
Protein Properties Length: 270aa    MW: 30040.1 Da    PI: 9.7946
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.99.5e-68932311139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaal+v++++p+f+ ldsg++k++r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l+++esceffhdp++++s+eGkvrk+lk
  XP_021299611.1  93 SVYKGKAALTVEPRAPEFVPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGARESCEFFHDPFKGKSEEGKVRKVLK 187
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdGsG+f+nl v+n+l++ +e++++P+++aef+vl+s+++
  XP_021299611.1 188 VEPLPDGSGHFFNLGVQNKLLNLDENIYIPITRAEFTVLNSAFS 231
                     ****************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLQLQFLSSP PLSAQTLNPN SNTKLLSSFS WLKSTQTLAV KLNPLSLTPK PSKFSLTSRQ  60
SEYFDQQQRF SNSSSTASPP ASGLPPRFYV GHSVYKGKAA LTVEPRAPEF VPLDSGAFKI  120
SREGFVLLQF APAAGVRQYD WSRKQVFSLS VTEIGTLISL GARESCEFFH DPFKGKSEEG  180
KVRKVLKVEP LPDGSGHFFN LGVQNKLLNL DENIYIPITR AEFTVLNSAF SFILPYLLGW  240
HAFANSIKPE EASHVNNANP RYGGDYEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-128Whirly family protein