PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299491.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 482aa MW: 52645.6 Da PI: 8.315

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.8e-11	110	134	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_021299491.1 110 GEKDCAHYMLTRTCKFGDSCKFDHP 134 7889********************8 PP
2	zf-CCCH	33.9	5.3e-11	163	187	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_021299491.1 163 EPDCPYFLKTQRCKFGSKCKFNHPK 187 789********************96 PP
3	zf-CCCH	31.9	2.3e-10	203	227	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+ +tG Ck+G++CkF+H++ XP_021299491.1 203 EPSCAFYVKTGKCKFGATCKFHHPK 227 577********************96 PP
4	zf-CCCH	38.2	2.4e-12	274	297	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_021299491.1 274 EVDCPFYLKTGSCKYGSSCRYNHP 297 579********************9 PP
5	zf-CCCH	40.3	5.4e-13	365	389	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG C++GdrCkF+H+ XP_021299491.1 365 GQTECEYYMKTGDCRFGDRCKFHHP 389 6789********************8 PP
6	zf-CCCH	39.4	1e-12	421	442	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_021299491.1 421 CPYYMKTGTCKYGATCKFDHPP 442 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MANQLYGYTP RYSSPSPTAS LSSALQRYLD SETTAHSHLL HHLQPWPPGV DVPSSAAPIK 60 RPSEVLYHQN ILDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT 120 RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTGESLPER AGEPDCPYFL KTQRCKFGSK 180 CKFNHPKDKL AISVAVLPER PSEPSCAFYV KTGKCKFGAT CKFHHPKDIQ IASSGQDNAR 240 GEQPEIVSKT GGATADVKPA LFHNSKGLPI RLDEVDCPFY LKTGSCKYGS SCRYNHPDRN 300 AFNPPAAVVG HSLVASASNL NIGVVTPAAS IYQTIDPRLG QSTLLAQPTF PTLGVAPTVY 360 PQRPGQTECE YYMKTGDCRF GDRCKFHHPI DRSASKTKQT SQQAIKLTLA GLPRREGNVH 420 CPYYMKTGTC KYGATCKFDH PPPGEVMAIA AAQGPSTAVG GEEKGEMEEA ETVGTNIAMR 480 SC

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MANQLYGYTP RYSSPSPTAS LSSALQRYLD SETTAHSHLL HHLQPWPPGV DVPSSAAPIK  60
RPSEVLYHQN ILDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT  120
RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTGESLPER AGEPDCPYFL KTQRCKFGSK  180
CKFNHPKDKL AISVAVLPER PSEPSCAFYV KTGKCKFGAT CKFHHPKDIQ IASSGQDNAR  240
GEQPEIVSKT GGATADVKPA LFHNSKGLPI RLDEVDCPFY LKTGSCKYGS SCRYNHPDRN  300
AFNPPAAVVG HSLVASASNL NIGVVTPAAS IYQTIDPRLG QSTLLAQPTF PTLGVAPTVY  360
PQRPGQTECE YYMKTGDCRF GDRCKFHHPI DRSASKTKQT SQQAIKLTLA GLPRREGNVH  420
CPYYMKTGTC KYGATCKFDH PPPGEVMAIA AAQGPSTAVG GEEKGEMEEA ETVGTNIAMR  480
SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein