PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299478.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1783aa MW: 199832 Da PI: 5.2344

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yps+++r+eL+ +lgL++rq ++WF+ rR k++k XP_021299478.1 28 KRKMKTASQLEILEKTYAMEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1783 aa Download sequence
MESGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPVHVV GAAGEEMGGG EAGNERGSDV 120 SSLFGHGLDL RRAVPRPGMA VPRYYEMPHS MAELELRAIT FVELQLGEPI RDDGPMLGME 180 FDPLPPGAFG APIAVQQKQS GQPFETKIYE RLDTKAVKGS VRAVHEYQFL PEQPSVRTET 240 YERVAPSYHY GSPTDGPHAR ASSLSTGCSF VHGNEKVPSG YGFPGQMPNL NLLPQQSRQG 300 HLLPTASGEY DNCSRKNSLT NTTVDAIIGA HPISALESPF VSSDRRVNLD EDALRMERKR 360 KSEEARIARE VEAHEKRIRK ELEKQDILRR KREEQIRKEM ERHDRERRKE EERLLREKQR 420 EEERYQREQR RELERREKFL MKESIRVERM RQKEELRKEK EAARLKAANE RAIARKLAKE 480 SMELIEDERL ELMELASSSK GLSSTLSLDF EILQNLDIFR DKLCVFPPKG VQLKRPFSIQ 540 PWNSSEENIG NLLMVWRFLI TFADVLGLWP FTLDELVQAF HDYDPRLLGE IHVALLRSII 600 KDIEDVARTP STGLGASQNS AANPGGGHLQ IVEGAYAWGF DIRSWQGHLN MLTWPEILRQ 660 FALSAGFGPQ LKKRNIEQAY LRDENEGNDG EDIISNLRNG AAAENAVAIM QERGFSNPRK 720 SRHRLTPGTV KFAAFHVLSL EDSEGLTILE VAEKIQKSGL RDLTTSKTPE ASIAAALSRD 780 TKLFERTAPS TYCVRSPYRK DPADAEAILS AARERIRVLK SGFVGEDAEG AERDEDSESD 840 IAEDLEVDDL GAEINPKKEM LNSEGSSSCN AKTILGNEKE ICEILETPQG EVRNVCKALS 900 SSTAGGIDEV KDIDAPVEQS MDATGIPNGA ANAGLEDTEI DESKLGEPWV QGLMEGDYSD 960 LSVEERLNAL IALISMAIEG NSIRVVLEER LEAANALKKQ MWAEAQLDKR RMKEEFGLRT 1020 NFSAHMGNKM EPSLMMSSAE CRQSPQIIGD RKHNESSVDL VVQQECLNNP QNDQNYLNNV 1080 PSEGNLPIQD FSVGPDNLQY PLPGCAAERS RSQLKSYIGH KAEEMYVYRS LPLGQDRRRN 1140 RYWRFITSAS GNDPGCGRIF VELLDGRWRL IDTEEGFDTL LSSLDVRGVR ESHLHAMLQK 1200 IEMSFKEAVR RNKLHVNMER QSGDTIKKEA NEMASGPDWN VSFESPSSTV SGSDSDMSET 1260 SISFSIELGR NEIEKYDALK RYRDFEKWMW KECFSLSSFC ATKYGKRRCK QLLGVCDSCF 1320 NIYFFEDNHC PSCHRTYVAS RVTLNFSEHV AQCAKKLQLG PGFALDGLVI SPLRIRLIKL 1380 QLALAEVSIP FEALQSAWTE GYRNLWGMKL YSSATAEELL QVLTLLESSI RRDCLSSKFE 1440 TTGELLFPSI LSGGVGDNST NLETVPVLPW IPKTTAAVAL RLIEFDAAIS YTLKQRAETH 1500 KGAGECTKLP SKYAVVKNNQ DHERMQTTNR VEYLQEASWA DVGIGGIGFS GSGRGRGRGR 1560 GRGVTRGGRS QRRPTGSRSE FSKRITTTDN ERLGPVLGWK SRSRGRGGRK RGRRSARSRP 1620 KPAKKMVEIA GESENPEEIM EKSSRNLATN TWNGDEVTRL QVRTADNASS SERSEYNDEN 1680 GQATGDEFDY LAGEDYAGSF NGKADDVMEG SEYNIDGDEG DEDDNGEERD DIAEEEQGNF 1740 IVGGYINENS DEEEIRDGDD PEDSDPYVKQ YGYSTEASSD FSE

Sequence ? help Back to Top

Protein Sequence Length: 1783 aa Download sequence

MESGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPVHVV GAAGEEMGGG EAGNERGSDV  120
SSLFGHGLDL RRAVPRPGMA VPRYYEMPHS MAELELRAIT FVELQLGEPI RDDGPMLGME  180
FDPLPPGAFG APIAVQQKQS GQPFETKIYE RLDTKAVKGS VRAVHEYQFL PEQPSVRTET  240
YERVAPSYHY GSPTDGPHAR ASSLSTGCSF VHGNEKVPSG YGFPGQMPNL NLLPQQSRQG  300
HLLPTASGEY DNCSRKNSLT NTTVDAIIGA HPISALESPF VSSDRRVNLD EDALRMERKR  360
KSEEARIARE VEAHEKRIRK ELEKQDILRR KREEQIRKEM ERHDRERRKE EERLLREKQR  420
EEERYQREQR RELERREKFL MKESIRVERM RQKEELRKEK EAARLKAANE RAIARKLAKE  480
SMELIEDERL ELMELASSSK GLSSTLSLDF EILQNLDIFR DKLCVFPPKG VQLKRPFSIQ  540
PWNSSEENIG NLLMVWRFLI TFADVLGLWP FTLDELVQAF HDYDPRLLGE IHVALLRSII  600
KDIEDVARTP STGLGASQNS AANPGGGHLQ IVEGAYAWGF DIRSWQGHLN MLTWPEILRQ  660
FALSAGFGPQ LKKRNIEQAY LRDENEGNDG EDIISNLRNG AAAENAVAIM QERGFSNPRK  720
SRHRLTPGTV KFAAFHVLSL EDSEGLTILE VAEKIQKSGL RDLTTSKTPE ASIAAALSRD  780
TKLFERTAPS TYCVRSPYRK DPADAEAILS AARERIRVLK SGFVGEDAEG AERDEDSESD  840
IAEDLEVDDL GAEINPKKEM LNSEGSSSCN AKTILGNEKE ICEILETPQG EVRNVCKALS  900
SSTAGGIDEV KDIDAPVEQS MDATGIPNGA ANAGLEDTEI DESKLGEPWV QGLMEGDYSD  960
LSVEERLNAL IALISMAIEG NSIRVVLEER LEAANALKKQ MWAEAQLDKR RMKEEFGLRT  1020
NFSAHMGNKM EPSLMMSSAE CRQSPQIIGD RKHNESSVDL VVQQECLNNP QNDQNYLNNV  1080
PSEGNLPIQD FSVGPDNLQY PLPGCAAERS RSQLKSYIGH KAEEMYVYRS LPLGQDRRRN  1140
RYWRFITSAS GNDPGCGRIF VELLDGRWRL IDTEEGFDTL LSSLDVRGVR ESHLHAMLQK  1200
IEMSFKEAVR RNKLHVNMER QSGDTIKKEA NEMASGPDWN VSFESPSSTV SGSDSDMSET  1260
SISFSIELGR NEIEKYDALK RYRDFEKWMW KECFSLSSFC ATKYGKRRCK QLLGVCDSCF  1320
NIYFFEDNHC PSCHRTYVAS RVTLNFSEHV AQCAKKLQLG PGFALDGLVI SPLRIRLIKL  1380
QLALAEVSIP FEALQSAWTE GYRNLWGMKL YSSATAEELL QVLTLLESSI RRDCLSSKFE  1440
TTGELLFPSI LSGGVGDNST NLETVPVLPW IPKTTAAVAL RLIEFDAAIS YTLKQRAETH  1500
KGAGECTKLP SKYAVVKNNQ DHERMQTTNR VEYLQEASWA DVGIGGIGFS GSGRGRGRGR  1560
GRGVTRGGRS QRRPTGSRSE FSKRITTTDN ERLGPVLGWK SRSRGRGGRK RGRRSARSRP  1620
KPAKKMVEIA GESENPEEIM EKSSRNLATN TWNGDEVTRL QVRTADNASS SERSEYNDEN  1680
GQATGDEFDY LAGEDYAGSF NGKADDVMEG SEYNIDGDEG DEDDNGEERD DIAEEEQGNF  1740
IVGGYINENS DEEEIRDGDD PEDSDPYVKQ YGYSTEASSD FSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1554	1563	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein