PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299469.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1786aa MW: 200020 Da PI: 5.2105

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yps+++r+eL+ +lgL++rq ++WF+ rR k++k XP_021299469.1 28 KRKMKTASQLEILEKTYAMEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1786 aa Download sequence
MESGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPVHVV GAAGEEMGGG EAGNERGSDV 120 SSLFGHGLDL RRAVPRPGMA VPRYYEMPHS MAELELRAIT FVELQLGEPI RDDGPMLGME 180 FDPLPPGAFG APIGASTAVQ QKQSGQPFET KIYERLDTKA VKGSVRAVHE YQFLPEQPSV 240 RTETYERVAP SYHYGSPTDG PHARASSLST GCSFVHGNEK VPSGYGFPGQ MPNLNLLPQQ 300 SRQGHLLPTA SGEYDNCSRK NSLTNTTVDA IIGAHPISAL ESPFVSSDRR VNLDEDALRM 360 ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILRRKREEQI RKEMERHDRE RRKEEERLLR 420 EKQREEERYQ REQRRELERR EKFLMKESIR VERMRQKEEL RKEKEAARLK AANERAIARK 480 LAKESMELIE DERLELMELA SSSKGLSSTL SLDFEILQNL DIFRDKLCVF PPKGVQLKRP 540 FSIQPWNSSE ENIGNLLMVW RFLITFADVL GLWPFTLDEL VQAFHDYDPR LLGEIHVALL 600 RSIIKDIEDV ARTPSTGLGA SQNSAANPGG GHLQIVEGAY AWGFDIRSWQ GHLNMLTWPE 660 ILRQFALSAG FGPQLKKRNI EQAYLRDENE GNDGEDIISN LRNGAAAENA VAIMQERGFS 720 NPRKSRHRLT PGTVKFAAFH VLSLEDSEGL TILEVAEKIQ KSGLRDLTTS KTPEASIAAA 780 LSRDTKLFER TAPSTYCVRS PYRKDPADAE AILSAARERI RVLKSGFVGE DAEGAERDED 840 SESDIAEDLE VDDLGAEINP KKEMLNSEGS SSCNAKTILG NEKEICEILE TPQGEVRNVC 900 KALSSSTAGG IDEVKDIDAP VEQSMDATGI PNGAANAGLE DTEIDESKLG EPWVQGLMEG 960 DYSDLSVEER LNALIALISM AIEGNSIRVV LEERLEAANA LKKQMWAEAQ LDKRRMKEEF 1020 GLRTNFSAHM GNKMEPSLMM SSAECRQSPQ IIGDRKHNES SVDLVVQQEC LNNPQNDQNY 1080 LNNVPSEGNL PIQDFSVGPD NLQYPLPGCA AERSRSQLKS YIGHKAEEMY VYRSLPLGQD 1140 RRRNRYWRFI TSASGNDPGC GRIFVELLDG RWRLIDTEEG FDTLLSSLDV RGVRESHLHA 1200 MLQKIEMSFK EAVRRNKLHV NMERQSGDTI KKEANEMASG PDWNVSFESP SSTVSGSDSD 1260 MSETSISFSI ELGRNEIEKY DALKRYRDFE KWMWKECFSL SSFCATKYGK RRCKQLLGVC 1320 DSCFNIYFFE DNHCPSCHRT YVASRVTLNF SEHVAQCAKK LQLGPGFALD GLVISPLRIR 1380 LIKLQLALAE VSIPFEALQS AWTEGYRNLW GMKLYSSATA EELLQVLTLL ESSIRRDCLS 1440 SKFETTGELL FPSILSGGVG DNSTNLETVP VLPWIPKTTA AVALRLIEFD AAISYTLKQR 1500 AETHKGAGEC TLPSKYAVVK NNQDHERMQT TNRVEYLQEA SWADVGIGGI GFSGSGRGRG 1560 RGRGRGVTRG GRSQRRPTGS RSEFSKRITT TDNERLGPVL GWKSRSRGRG GRKRGRRSAR 1620 SRPKPAKKMV EIAGESENPE EIMEKSSRNL ATNTWNGDEV TRLQVRTADN ASSSERSEYN 1680 DENGQATGDE FDYLAGEDYA GSFNGKADDV MEGSEYNIDG DEGDEDDNGE ERDDIAEEEQ 1740 GNFIVGGYIN ENSDEEEIRD GDDPEDSDPY VKQYGYSTEA SSDFSE

Sequence ? help Back to Top

Protein Sequence Length: 1786 aa Download sequence

MESGGVSGGG GSSEGEKKKP PEGETKVKRK MKTASQLEIL EKTYAMEMYP SEATRAELSV  60
QLGLSDRQLQ MWFCHRRLKD RKAPPVKRRR KDSSLPVHVV GAAGEEMGGG EAGNERGSDV  120
SSLFGHGLDL RRAVPRPGMA VPRYYEMPHS MAELELRAIT FVELQLGEPI RDDGPMLGME  180
FDPLPPGAFG APIGASTAVQ QKQSGQPFET KIYERLDTKA VKGSVRAVHE YQFLPEQPSV  240
RTETYERVAP SYHYGSPTDG PHARASSLST GCSFVHGNEK VPSGYGFPGQ MPNLNLLPQQ  300
SRQGHLLPTA SGEYDNCSRK NSLTNTTVDA IIGAHPISAL ESPFVSSDRR VNLDEDALRM  360
ERKRKSEEAR IAREVEAHEK RIRKELEKQD ILRRKREEQI RKEMERHDRE RRKEEERLLR  420
EKQREEERYQ REQRRELERR EKFLMKESIR VERMRQKEEL RKEKEAARLK AANERAIARK  480
LAKESMELIE DERLELMELA SSSKGLSSTL SLDFEILQNL DIFRDKLCVF PPKGVQLKRP  540
FSIQPWNSSE ENIGNLLMVW RFLITFADVL GLWPFTLDEL VQAFHDYDPR LLGEIHVALL  600
RSIIKDIEDV ARTPSTGLGA SQNSAANPGG GHLQIVEGAY AWGFDIRSWQ GHLNMLTWPE  660
ILRQFALSAG FGPQLKKRNI EQAYLRDENE GNDGEDIISN LRNGAAAENA VAIMQERGFS  720
NPRKSRHRLT PGTVKFAAFH VLSLEDSEGL TILEVAEKIQ KSGLRDLTTS KTPEASIAAA  780
LSRDTKLFER TAPSTYCVRS PYRKDPADAE AILSAARERI RVLKSGFVGE DAEGAERDED  840
SESDIAEDLE VDDLGAEINP KKEMLNSEGS SSCNAKTILG NEKEICEILE TPQGEVRNVC  900
KALSSSTAGG IDEVKDIDAP VEQSMDATGI PNGAANAGLE DTEIDESKLG EPWVQGLMEG  960
DYSDLSVEER LNALIALISM AIEGNSIRVV LEERLEAANA LKKQMWAEAQ LDKRRMKEEF  1020
GLRTNFSAHM GNKMEPSLMM SSAECRQSPQ IIGDRKHNES SVDLVVQQEC LNNPQNDQNY  1080
LNNVPSEGNL PIQDFSVGPD NLQYPLPGCA AERSRSQLKS YIGHKAEEMY VYRSLPLGQD  1140
RRRNRYWRFI TSASGNDPGC GRIFVELLDG RWRLIDTEEG FDTLLSSLDV RGVRESHLHA  1200
MLQKIEMSFK EAVRRNKLHV NMERQSGDTI KKEANEMASG PDWNVSFESP SSTVSGSDSD  1260
MSETSISFSI ELGRNEIEKY DALKRYRDFE KWMWKECFSL SSFCATKYGK RRCKQLLGVC  1320
DSCFNIYFFE DNHCPSCHRT YVASRVTLNF SEHVAQCAKK LQLGPGFALD GLVISPLRIR  1380
LIKLQLALAE VSIPFEALQS AWTEGYRNLW GMKLYSSATA EELLQVLTLL ESSIRRDCLS  1440
SKFETTGELL FPSILSGGVG DNSTNLETVP VLPWIPKTTA AVALRLIEFD AAISYTLKQR  1500
AETHKGAGEC TLPSKYAVVK NNQDHERMQT TNRVEYLQEA SWADVGIGGI GFSGSGRGRG  1560
RGRGRGVTRG GRSQRRPTGS RSEFSKRITT TDNERLGPVL GWKSRSRGRG GRKRGRRSAR  1620
SRPKPAKKMV EIAGESENPE EIMEKSSRNL ATNTWNGDEV TRLQVRTADN ASSSERSEYN  1680
DENGQATGDE FDYLAGEDYA GSFNGKADDV MEGSEYNIDG DEGDEDDNGE ERDDIAEEEQ  1740
GNFIVGGYIN ENSDEEEIRD GDDPEDSDPY VKQYGYSTEA SSDFSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1557	1566	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein