PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299392.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 308aa MW: 34252.2 Da PI: 7.3265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.3e-15	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_021299392.1 229 FKTELCNKWQETGACPYGDHCQFAHG 254 79***********************8 PP
2	zf-CCCH	18.7	3.1e-06	267	291	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H XP_021299392.1 267 YKTEVCRMVLAGDVCPYGHRCHFRH 291 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MQNDKGSAVY GDLAAKQSHD LQSDDIYSSS PPPPLLPPPL FSALYHPRLL MQQHQDMINR 60 HNLCLTRLRD AAKEAEALRH ENTALRSVNR DLNKQLSALI QASVQNTFAS SDYNTTPFEL 120 VNALRGLCLG DGGVGEEEVX DESPTSVMEG AGDVERVMLP KSISVRSXGY LKMMSQAGAS 180 HRGKTRGPTR PGNATQLSGA VNVQQKVYVQ GGKKEEEPLE LEVYNQGMFK TELCNKWQET 240 GACPYGDHCQ FAHGIEELRP VIRHPRYKTE VCRMVLAGDV CPYGHRCHFR HALTEQEKFM 300 GQLKPRTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	9e-86	C3H family protein