PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299376.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARR-B

Protein Properties

Length: 598aa MW: 66492 Da PI: 8.2199

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.6	4.4e-21	264	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl+W+peLH++F a++ L G e+A Pk+il++m+ + Lt +v+SHLQkY+ XP_021299376.1 264 KSRLVWNPELHHKFTAALSAL-GDENARPKSILQMMNEPTLTHRQVASHLQKYKA 317 68*****************.9****************************85 PP
2	Myb_DNA-binding	34.6	4.4e-11	266	316	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ W +e++ ++ a lG + ++k+I ++m+ ++t q+ s++qky+ XP_021299376.1 266 RLVWNPELHHKFTAALSALGDEnaRPKSILQMMNePTLTHRQVASHLQKYK 316 789***************99**************************7 PP
3	Response_reg	44.7	7.4e-16	18	123	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vd + + ++ l+ +le+ y +v+++ ++ a+ ++++ + + l++ i+m + + l +l+ + +++ +p+iv++++ +e+ a++a+ +G XP_021299376.1 18 ILLVDHDTTSLMYLAAMLERYSY-KVTTTVLPSVAVSMIQQGNnsFKLVMANIDMEDKNSLSFLRALLKKG--IPVIVMSSERSENVAQKAIAYG 109 89*******************.***********999999******************8877..****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a+ +l Kp++ ++l XP_021299376.1 110 ASLHLQKPISFSDL 123 *******99988 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MKELSRSKIP RCSRGLPILL VDHDTTSLMY LAAMLERYSY KVTTTVLPSV AVSMIQQGNN 60 SFKLVMANID MEDKNSLSFL RALLKKGIPV IVMSSERSEN VAQKAIAYGA SLHLQKPISF 120 SDLTYLWQHA YRNVKNQAIK FKEVASQSKS AVARNYNFIG IDETNDPKGK NKEVAETDVR 180 IPKTNCVMGL KQTPIEHMLA KENLKHGEPS SETKKSYADK EDKRENKRNK PNPELADFGK 240 AETAKQEGGK DEKNNQSRSP KGKKSRLVWN PELHHKFTAA LSALGDENAR PKSILQMMNE 300 PTLTHRQVAS HLQKYKAQVP RLSTPRTSNL PAVSNACTSK YGKAGLFDML QKNKSILNHL 360 EHQSADFSIR DSFQFPNLVQ DSTAPISSLY QNQQFPMVPQ TMNQKLNVTL DSTDPVSSFN 420 LTLQFPSMLP YMNQNLNFTA GSDFTDLPNQ TQQFPNVPQF PDVHQFVPQM QNFIPDSTPT 480 SVSLNQGQVF VSSSQPTQGI NSTVAQCRAM PDANKFLTEI IGGDSGVDAT AHAATPSAPS 540 ESQHQHSPEL ANLLKVLDEE SDATRGSGIE PHPGEVDQFC EWLKEAIVDN NENPYLAS

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MKELSRSKIP RCSRGLPILL VDHDTTSLMY LAAMLERYSY KVTTTVLPSV AVSMIQQGNN  60
SFKLVMANID MEDKNSLSFL RALLKKGIPV IVMSSERSEN VAQKAIAYGA SLHLQKPISF  120
SDLTYLWQHA YRNVKNQAIK FKEVASQSKS AVARNYNFIG IDETNDPKGK NKEVAETDVR  180
IPKTNCVMGL KQTPIEHMLA KENLKHGEPS SETKKSYADK EDKRENKRNK PNPELADFGK  240
AETAKQEGGK DEKNNQSRSP KGKKSRLVWN PELHHKFTAA LSALGDENAR PKSILQMMNE  300
PTLTHRQVAS HLQKYKAQVP RLSTPRTSNL PAVSNACTSK YGKAGLFDML QKNKSILNHL  360
EHQSADFSIR DSFQFPNLVQ DSTAPISSLY QNQQFPMVPQ TMNQKLNVTL DSTDPVSSFN  420
LTLQFPSMLP YMNQNLNFTA GSDFTDLPNQ TQQFPNVPQF PDVHQFVPQM QNFIPDSTPT  480
SVSLNQGQVF VSSSQPTQGI NSTVAQCRAM PDANKFLTEI IGGDSGVDAT AHAATPSAPS  540
ESQHQHSPEL ANLLKVLDEE SDATRGSGIE PHPGEVDQFC EWLKEAIVDN NENPYLAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	3e-41	ARR-B family protein