PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299313.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 817aa MW: 94289.4 Da PI: 6.4479

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	9.7e-23	139	225	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng i++r+++C+++g+r ++++ + r++r+e rtgC a++++ ++ +gk++v+++e++HnHe++ XP_021299313.1 139 CYSRYAVLEGFSIRKDFVNKSRVNGAIVSRRYTCYRQGYRPSRHNV--NVRKPRQEMRTGCLAHMTIARQPNGKFRVSHFETKHNHEFV 225 7*************************************999876..99***********************************86 PP
2	FAR1	89.7	3.9e-28	273	361	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l+++++ dgk++vt++e +HnHel+ XP_021299313.1 273 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRPRKETRIGCLAQLVISRQPDGKYRVTHFEGKHNHELV 361 6*****************************************999.9999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MDSSDPDILT QGQTLDIQND LQESYQVDVD VGQECQSLEA CSVEKSQEVT ESESDSQSPN 60 ASSVDKSEVE INGDECQTAQ VPAVNKCEID VDGEQDSQSP NALSVDVLEA RVSVKDEDDI 120 FVVPAVGMEF ESEEHAYKCY SRYAVLEGFS IRKDFVNKSR VNGAIVSRRY TCYRQGYRPS 180 RHNVNVRKPR QEMRTGCLAH MTIARQPNGK FRVSHFETKH NHEFVNPSTA HLLPSQKRLT 240 FAQAVESDIA SSSGMDGVPK LGMGFESEDH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV 300 ASRRFTCFRE GFRQKDKRDL NVKRPRKETR IGCLAQLVIS RQPDGKYRVT HFEGKHNHEL 360 VAACRVWMLR SQKRLAVAQI VEGNALESYK VQAKSAYEVS CNSIRDCVDH GYDPSDHRSK 420 LSSKRTRDMR EGEAERIQQY FQSRKVKNPS FFYAIQLDAE NQIANIFWAD AKMIMDYSDF 480 GDVLCFDTTY MLNKDCRLFS PFLGVNHHKQ MVIFGAALLY DDTVDSFKWL FQKFLEAMSG 540 KNPKTILTDQ DAVVSEAVNS IFPEIHQRMS VWHVYQSALK QLSHKFVGQS FVNDLSSCFF 600 NHEEEEDFIA AWNIMLDVHD LWEIEWLNKI FETREQWAIA YKRHIFCADI NSVLLHESFI 660 VNLKKYLKPE SDVLSLLKHL GKVVNDWHYK ELEANYDMNQ NMPRLMGDVI LLKHARDAYT 720 PRIFELFQQE YEVCLNYVVN QCIKSETAFE YKVSTYGQPR EYAVSYNLAD NTVFCSCMKY 780 EFMGVLCSHA LKVLDYRNIR LLPSQYILKR WTRDARV

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MDSSDPDILT QGQTLDIQND LQESYQVDVD VGQECQSLEA CSVEKSQEVT ESESDSQSPN  60
ASSVDKSEVE INGDECQTAQ VPAVNKCEID VDGEQDSQSP NALSVDVLEA RVSVKDEDDI  120
FVVPAVGMEF ESEEHAYKCY SRYAVLEGFS IRKDFVNKSR VNGAIVSRRY TCYRQGYRPS  180
RHNVNVRKPR QEMRTGCLAH MTIARQPNGK FRVSHFETKH NHEFVNPSTA HLLPSQKRLT  240
FAQAVESDIA SSSGMDGVPK LGMGFESEDH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV  300
ASRRFTCFRE GFRQKDKRDL NVKRPRKETR IGCLAQLVIS RQPDGKYRVT HFEGKHNHEL  360
VAACRVWMLR SQKRLAVAQI VEGNALESYK VQAKSAYEVS CNSIRDCVDH GYDPSDHRSK  420
LSSKRTRDMR EGEAERIQQY FQSRKVKNPS FFYAIQLDAE NQIANIFWAD AKMIMDYSDF  480
GDVLCFDTTY MLNKDCRLFS PFLGVNHHKQ MVIFGAALLY DDTVDSFKWL FQKFLEAMSG  540
KNPKTILTDQ DAVVSEAVNS IFPEIHQRMS VWHVYQSALK QLSHKFVGQS FVNDLSSCFF  600
NHEEEEDFIA AWNIMLDVHD LWEIEWLNKI FETREQWAIA YKRHIFCADI NSVLLHESFI  660
VNLKKYLKPE SDVLSLLKHL GKVVNDWHYK ELEANYDMNQ NMPRLMGDVI LLKHARDAYT  720
PRIFELFQQE YEVCLNYVVN QCIKSETAFE YKVSTYGQPR EYAVSYNLAD NTVFCSCMKY  780
EFMGVLCSHA LKVLDYRNIR LLPSQYILKR WTRDARV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-114	FAR1 family protein