PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299162.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 31296.6 Da PI: 4.4741

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	1.9e-20	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k XP_021299162.1 65 KKRRLTAEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118 56789************************************************9 PP
2	HD-ZIP_I/II	135.3	2.1e-43	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l+++ +++ ke+e+L++e+++ XP_021299162.1 64 EKKRRLTAEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLVSNYDSIVKENEKLKSEVAS 156 69**************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MESGRLFFNS STCHGNMLFL GNSDPVFRGA RTMISMEETS KRRPFFSSPE DMYDEEYYDE 60 QLPEKKRRLT AEQVHLLEKS FETENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDSLVSNY DSIVKENEKL KSEVASLTEK LQAKDATAEP VIGQKPEPVP 180 ADMVSSLQFS VKVEDRLSTG SAGSAVVDED APQLLDSGDS YFPSDGYPGG CVGPVNGVQS 240 EEEDGSDDGR SYFSNVFTAS EEQQQHEESL GWWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-117	HD-ZIP family protein