PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298869.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 440aa MW: 48627.1 Da PI: 5.8861

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30	1e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_021298869.1 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 59 578*****************************657788888876 PP
2	CCT	62.4	1.4e-21	384	427	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+Rp +KGrFvk+a XP_021298869.1 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPXMKGRFVKRA 427 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MISTKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN SLARRHERVR 60 LKTASVQSSG HEAPLESFAP SWHKGFTRKA RTRRPTKASI HQKLKAKHTK RNSNPFPLVP 120 EIGADEISYE ENEEEQLLYR VPIFDPLVAE LCTSTTSNEA AVSAVGNDVE TADAAVSESK 180 AFLACNGQDA DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFGMEDLGL MDSKEKDFRD 240 CSLGNGKVKI EDEESFEAVG ACQVDSEIDM AREPLELNFN CDSPCNCGEE DKSVKEEVTV 300 KSYEEYEEDT AKKKKRKILL SLDYESVITA WASQGSPWTS GGRPDFDPDE CWPDCMGTGG 360 TEVHHTYSDL TGMGAHQALG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPXMK 420 GRFVKRASFL AGPAFPLVSK

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MISTKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHSAN SLARRHERVR  60
LKTASVQSSG HEAPLESFAP SWHKGFTRKA RTRRPTKASI HQKLKAKHTK RNSNPFPLVP  120
EIGADEISYE ENEEEQLLYR VPIFDPLVAE LCTSTTSNEA AVSAVGNDVE TADAAVSESK  180
AFLACNGQDA DGSHGLFPSE MDLAEFAADV ESLLGKGLEN ESFGMEDLGL MDSKEKDFRD  240
CSLGNGKVKI EDEESFEAVG ACQVDSEIDM AREPLELNFN CDSPCNCGEE DKSVKEEVTV  300
KSYEEYEEDT AKKKKRKILL SLDYESVITA WASQGSPWTS GGRPDFDPDE CWPDCMGTGG  360
TEVHHTYSDL TGMGAHQALG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPXMK  420
GRFVKRASFL AGPAFPLVSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	317	KKKKRK
2	395	411	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-101	CO-like family protein