PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021298847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35757 Da PI: 6.1707 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++++G g+W+ a++ g++Rt+k+c++rw++yl XP_021298847.1 24 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLRRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_021298847.1 77 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence |
MRSAMPPVTK GMCPPSEDDS ELRRGPWTLE EDTLLTHYIA RHGEGRWNML AKCAGLRRTG 60 KSCRLRWLNY LKPDIKRGNL TPQEQLLILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKQARQLN IESNSKKFLE AVRCFWMPTL LQKVEQTSSS SSLKEMSSQN SAPSDQLLDC 180 AIPSLSTFSP LPNKITDRSN HSFENSSSVT SQSLYPTDFI NTSEQTEIPE HLTSPNVYGH 240 ATVYNNNQIV NASYNIDSSG YDMEGFSLAS MSAVGSYEGS PSECQMGEGN WICNEMTDTL 300 WNMDDIWQFR ELGE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-94 | MYB family protein |