PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298766.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 575aa MW: 63212.9 Da PI: 7.8901

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	38.9	1.7e-12	125	162	4	42
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+C Ck+skClk+YCeCfa++++C+ C+C dC+N+ e+ XP_021298766.1 125 KQCGCKQSKCLKLYCECFASREYCNG-CNCADCCNNVEN 162 89**********************.******9875 PP
2	TCR	52.5	9.6e-17	208	245	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a+++Cse+CkC dCkN XP_021298766.1 208 HERGCHCKKSECLKRYCECFQANVFCSENCKCVDCKNF 245 889**********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MRQLEIENGD FPPKTIEVVT ATPCFPPKGI KSVERTRDSV KVTVKERSSP HFPPKKKLAR 60 QLIFTEFGLS PIITTSPQLP VVKPSSELHL SPRCASSSIK PESPIPIPLP QANIKANSGT 120 PKGPKQCGCK QSKCLKLYCE CFASREYCNG CNCADCCNNV ENGDLRKAAA EIILERNPHA 180 FKPKIASTPC SPQDVGGDKE GAPPAGRHER GCHCKKSECL KRYCECFQAN VFCSENCKCV 240 DCKNFEVCKG TMAASGKDDS KSKIYENSKG CEGRVAISSK DNGNRKFYRS FKGSGGLMAV 300 IGEDCIDTKI YIQRVTAATS NATGLSGQCL SQESRKRKHL ELHSNEKDTL IESFSDFQKV 360 NNLKNSCPSA TLSVEPTCHI INSAMLGSFR HPYRLTLADV LHLEDTRNVC SGLAVLAEAA 420 KQFADKVGMA DVKDAAENKH GDAPEAKEED CPGGPAYFQK RVPDDLHLDG GATDAQEGRI 480 LPHGTVKLIC NEKHKQFMEP TSPKQILDRD IKNANAEQER CVLSSFRDFL EELITFTNIK 540 DDAFLFPYWY LVHVTGTNEF SSARTVPTEK TGTEV

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MRQLEIENGD FPPKTIEVVT ATPCFPPKGI KSVERTRDSV KVTVKERSSP HFPPKKKLAR  60
QLIFTEFGLS PIITTSPQLP VVKPSSELHL SPRCASSSIK PESPIPIPLP QANIKANSGT  120
PKGPKQCGCK QSKCLKLYCE CFASREYCNG CNCADCCNNV ENGDLRKAAA EIILERNPHA  180
FKPKIASTPC SPQDVGGDKE GAPPAGRHER GCHCKKSECL KRYCECFQAN VFCSENCKCV  240
DCKNFEVCKG TMAASGKDDS KSKIYENSKG CEGRVAISSK DNGNRKFYRS FKGSGGLMAV  300
IGEDCIDTKI YIQRVTAATS NATGLSGQCL SQESRKRKHL ELHSNEKDTL IESFSDFQKV  360
NNLKNSCPSA TLSVEPTCHI INSAMLGSFR HPYRLTLADV LHLEDTRNVC SGLAVLAEAA  420
KQFADKVGMA DVKDAAENKH GDAPEAKEED CPGGPAYFQK RVPDDLHLDG GATDAQEGRI  480
LPHGTVKLIC NEKHKQFMEP TSPKQILDRD IKNANAEQER CVLSSFRDFL EELITFTNIK  540
DDAFLFPYWY LVHVTGTNEF SSARTVPTEK TGTEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	5e-63	CPP family protein