PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298731.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 753aa MW: 83028 Da PI: 6.3957

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_021298731.1 98 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	START	230.7	4.1e-72	269	491	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++el k+a+a+ep+Wv+s+ e++n+de++++f+ +++ +s+ea+r +gvv+ +l++lv++++d++ qW+e+++ ka+t++ XP_021298731.1 269 VNQATEELKKMATAGEPLWVRSVetgrEILNYDEYVKEFSVENSsngrpkRSIEASRGTGVVFVDLPRLVQSFVDVN-QWKEMFPclisKAATVD 362 578999*******************************8888899***************************.************* PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 vi++g ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kvtwveh + XP_021298731.1 363 VICNGeapnrsGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLE 456 *******************************************************98.9**************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++h ++r +v+sgla+ga++w+atlq qce+ XP_021298731.1 457 CQKSTVHTMYRTVVSSGLAFGARHWMATLQLQCER 491 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MGVDMSNPPT KDFFASPALS LSLAGIFRDA GAAAAAAAAN MEVEEGDEGS GGGGSGKREE 60 TVEISSENSG PARSRSEDEL LEHEDEEDDG DKSKKKKRKK YHRHTAEQIR EMEALFKESP 120 HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKQELDK LRDENKAMRE 180 TINKACCPSC GMATTSKDGS MTTEGQQLRI ENAKLKAEVE KLRAAIGKYP PGAASTSSCS 240 AANDQENRSS LDFYTGIFGL EKSRIMEIVN QATEELKKMA TAGEPLWVRS VETGREILNY 300 DEYVKEFSVE NSSNGRPKRS IEASRGTGVV FVDLPRLVQS FVDVNQWKEM FPCLISKAAT 360 VDVICNGEAP NRSGAVQLMF AELQMLTPLV PTREVYFVRY CKQLSAEQWA IVDVSIDKVE 420 ENIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHTMYRTVV SSGLAFGARH 480 WMATLQLQCE RLVFFMATNV PTKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSYHTW 540 NKVPSKTGED IRVSSRKNLN DPGEPLGVIV CAVSSVWLPV SPNVLFDFLR DEARRNEWDI 600 MSNGGPVQSI ANLAKGQDRG NAVAIQAMKS KENSTWVLQD SCTNAFESMV IFAHVDIAGM 660 QSVITGCDSS NMAILPSGFS ILPDGLESRP LVITSRQEKS NDTEGGSLLT IAFQILTNSS 720 PTAKLTMESV ESVNTLISCT LRSIKTSLQC EDG

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MGVDMSNPPT KDFFASPALS LSLAGIFRDA GAAAAAAAAN MEVEEGDEGS GGGGSGKREE  60
TVEISSENSG PARSRSEDEL LEHEDEEDDG DKSKKKKRKK YHRHTAEQIR EMEALFKESP  120
HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKQELDK LRDENKAMRE  180
TINKACCPSC GMATTSKDGS MTTEGQQLRI ENAKLKAEVE KLRAAIGKYP PGAASTSSCS  240
AANDQENRSS LDFYTGIFGL EKSRIMEIVN QATEELKKMA TAGEPLWVRS VETGREILNY  300
DEYVKEFSVE NSSNGRPKRS IEASRGTGVV FVDLPRLVQS FVDVNQWKEM FPCLISKAAT  360
VDVICNGEAP NRSGAVQLMF AELQMLTPLV PTREVYFVRY CKQLSAEQWA IVDVSIDKVE  420
ENIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHTMYRTVV SSGLAFGARH  480
WMATLQLQCE RLVFFMATNV PTKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSYHTW  540
NKVPSKTGED IRVSSRKNLN DPGEPLGVIV CAVSSVWLPV SPNVLFDFLR DEARRNEWDI  600
MSNGGPVQSI ANLAKGQDRG NAVAIQAMKS KENSTWVLQD SCTNAFESMV IFAHVDIAGM  660
QSVITGCDSS NMAILPSGFS ILPDGLESRP LVITSRQEKS NDTEGGSLLT IAFQILTNSS  720
PTAKLTMESV ESVNTLISCT LRSIKTSLQC EDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	KKKKRK
2	94	100	KKKKRKK
3	96	100	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein