PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298721.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 316aa    MW: 34369.4 Da    PI: 6.3909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041982361255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_021298721.1 198 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 236
                     6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MMAGNPSWWS MHPPSQQSSA LLTPSPSLFP PQYVLGSSTL PPNSLADNQE LPQSWSQLLL  60
CGLSGEEERF GPSHFHTKKL ENWENQILNP SSRVPVVDVK QEVTQNSNLY GHGDEEFQAS  120
RPPAAAAWSH IMPVSSPRSC ITSLSGSNIL DFSYNKAADG TNTQPLDHSS ECNSTATGGL  180
CKKARVQPSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG YIRFLQGQIE  240
ALSSPYLGTA STNMRNQQSV QRERNCAFPE EQGQDIQDKP KDLRSRGLCL VPVSCTQQVG  300
SDNGADYWAP AFGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-73bHLH family protein