PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298577.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 397aa MW: 45794.1 Da PI: 4.3604

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.2e-16	163	247	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W++v+++++e ++er+ +qC+++++ l+k+ykk+k++ + t ++s+++yf++++ XP_021298577.1 163 WTERETFVLLDAWGDRFLQRGRKSLRSEEWQDVAERVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGATTSKWVYFKKMD 247 ***********************************762678**********************9.577888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDDIEDDARY PPNPYGVSHQ QGYGSSNRQK LPVRNAPYAR PIVNQYVDDD EDEEEEEDEE 60 DLGEEEENHN QNNGVRYVGK DMDDDEEEEE LDEDEDDNDE GGDKQKGYNR KSDEVDMERH 120 PKKRKLKSLV SSYEFAPRVP APAVAATSVP KPSYGGRNSL TDWTERETFV LLDAWGDRFL 180 QRGRKSLRSE EWQDVAERVS EVSKIERTDT QCRNRLDTLK KKYKKEKAML AETGATTSKW 240 VYFKKMDMLM TTPPQQGGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP ANSESADGEE 300 DISDGLPPKK RRFGRQSDEG SSFRLLADSI QKFSDIYEKI ENSKRQQMLE LEKMRMDFHK 360 ELEMQKRQIM ERAQAEIAKI QQGDDEENDV SAENASE

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDDIEDDARY PPNPYGVSHQ QGYGSSNRQK LPVRNAPYAR PIVNQYVDDD EDEEEEEDEE  60
DLGEEEENHN QNNGVRYVGK DMDDDEEEEE LDEDEDDNDE GGDKQKGYNR KSDEVDMERH  120
PKKRKLKSLV SSYEFAPRVP APAVAATSVP KPSYGGRNSL TDWTERETFV LLDAWGDRFL  180
QRGRKSLRSE EWQDVAERVS EVSKIERTDT QCRNRLDTLK KKYKKEKAML AETGATTSKW  240
VYFKKMDMLM TTPPQQGGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP ANSESADGEE  300
DISDGLPPKK RRFGRQSDEG SSFRLLADSI QKFSDIYEKI ENSKRQQMLE LEKMRMDFHK  360
ELEMQKRQIM ERAQAEIAKI QQGDDEENDV SAENASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-71	Trihelix family protein